Spatial Modeling on Stream Networks


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Documentation for package ‘SSN’ version 1.1.17

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SSN-package Spatial Modeling on Stream Networks
additive.function Generate an Additive Function Value
AIC.glmssn AIC for glmssn objects
as.SpatialLines Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialLines.SpatialStreamNetwork Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialLinesDataFrame Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialLinesDataFrame.SpatialStreamNetwork Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPoints Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPoints.SpatialStreamNetwork Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPointsDataFrame Methods to convert SpatialStreamNetwork objects classes to sp classes
as.SpatialPointsDataFrame.SpatialStreamNetwork Methods to convert SpatialStreamNetwork objects classes to sp classes
binomialDesign Design functions
binSp Fitted glmssn object for example data set MiddleFork.ssn
BlockPredict Block Predicton for Streams Data
BLUP Compute the joint mean, variance and covariance of any random effects in a glmssn model conditional on the data
boxplot.SpatialStreamNetwork Box-and-whisker plots for data within SpatialStreamNetwork objects.
copyLSN2temp Copies the lsn directory MiddleFork04.ssn to R's temporary directory
covparms Get Covariance Parameters
createDistMat Calculate Hydrologic Distances for a SpatialStreamNetwork Object
createSSN Create an SpatialStreamnetwork Object
CrossValidationSSN Compute Crossvalidation Values for glmssn Objects
CrossValidationStatsSSN Compute Summary Statistics on Crossvalidation Values for glmssn Objects
EmpiricalSemivariogram Empirical Semivariogram Based on Euclidean Distance
fitNS Fitted glmssn object for example data set MiddleFork.ssn
fitRE Fitted glmssn object for example data set MiddleFork.ssn
fitSimBin Fitted glmssn object for simulated data
fitSimGau Fitted glmssn object for simulated data
fitSimPoi Fitted glmssn object for simulated data
fitSp Fitted glmssn object for example data set MiddleFork.ssn
fitSpBk Fitted glmssn object for example data set MiddleFork.ssn
fitSpRE1 Fitted glmssn object for example data set MiddleFork.ssn
fitSpRE2 Fitted glmssn object for example data set MiddleFork.ssn
getConfusionMat Extract confusion matrix for binary spatial model predictions.
getPreds Extract Predictions with associated standard errors.
getSSNdata.frame Extract data from SSN objects as a data.frame
getStreamDistMat Extract the stream network distance matrix from SSN objects
glmssn Fitting Generalized Linear Models for Spatial Stream Networks
glmssn-class Class "glmssn"
GR2 Generalised R2
hardCoreDesign Design functions
igraphKamadaKawai Create an SpatialStreamnetwork Object
importPredpts Import Prediction Points into a SpatialStreamNetwork or glmssn Object
importSSN Import an object of class SpatialStreamNetwork
influenceSSN-class Class "influenceSSN"
InfoCritCompare Compare 'glmssn' Information Criteria
iterativeTreeLayout Create an SpatialStreamnetwork Object
mf04 imported SpatialStreamNetwork object from MiddleFork04.ssn data folder
mf04p Imported SpatialStreamNetwork object from MiddleFork04.ssn data folder
MiddleFork04.ssn MiddleFork04.ssn data folder
noPoints Design functions
plot.glmssn.predict Plot glmssn.predict Objects
plot.influenceSSN Plotting Method for influenceSSN Objects
plot.SpatialStreamNetwork Plotting Method for SpatialStreamNetwork Objects
plot.Torgegram Plotting Method for Torgegram Objects
poiSp Fitted glmssn object for example data set MiddleFork.ssn
poissonDesign Design functions
predict.glmssn Calculate Predictions for Prediction Sites
print.summary.glmssn Print summary - S3 Method for Class 'glmssn'
putSSNdata.frame putSSNdata.frame
residuals.glmssn Compute Model Residuals for glmssn Objects
SimulateOnSSN Simulating Data on Spatial Stream Networks
SpatialStreamNetwork-class Class "SpatialStreamNetwork"
SSN Spatial Modeling on Stream Networks
summary.glmssn Summary - S3 Method for Class 'glmssn'
summary.SpatialStreamNetwork Plotting Method for SpatialStreamNetwork Objects
systematicDesign Design functions
Torgegram Empirical Semivariogram Based on Hydrologic Distance and flow connection
updatePath Update Path Slot in SpatialStreamNetwork Object
varcomp Variance Components for glmssn Objects