Tools for DYRESM-CAEDYM Model Development: Calibration Assistant and Post-Processing

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Documentation for package ‘dycdtools’ version 0.4.3

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calib_assist Assist calibration of DYRESM-CAEDYM model.
change_input_file Change parameter value of input files to DYRESM_CAEDYM model.
delete_space Delete all whitespace until a non-whitespace character.
ext_output Extract outputs from a DYRESM-CAEDYM model run
hgt_to_dpt convert from height to depth
interpol Interpolation of DYRESM-CAEDYM simulation results across a series of user-defined depths.
objective_fun Calculate statistical measures of goodness of fit for DYRESM-CAEDYM model simulations.
obs_temp Example observed profiling temperature data across different depths over the period of 6-11 June 2017.
output_name Default DYCD simulation variable names with their variable name
plot_cont Contour plot of only simulation results of a water quality variable.
plot_cont_comp Contour plot of DYRESM-CAEDYM simulation outputs of a water quality variable, with observed data shown as dots in the generated contour plot.
plot_prof A post-processing function used to visualise model output in a profile graph.
plot_scatter Scatter plot of the simulation and observation of a water quality variable. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.
plot_ts Time series plot of simulated and observed values at target depths. This function is based on ggplot2, and users can treat the object of this function in the same way as a ggplot2 object.
run_iteration Internal function to provide parallel processing support to the calibration assistant function.