Inferring Cell-Specific Gene Regulatory Network

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Documentation for package ‘inferCSN’ version 0.99.0

• DESCRIPTION file.

Help Pages

inferCSN-package	inferCSN: Inferring Cell-Specific Gene Regulatory Network
acc.calculate	ACC calculate
auc.calculate	AUC value calculate
check.parameters	Check input parameters
coef.inferCSN	Extracts a specific solution in the regularization path
coef.inferCSNCV	Extracts a specific solution in the regularization path
compute.gene.rank	Compute and rank TFs in network
contrast.networks	contrast.networks
dynamic.networks	Plot of dynamic networks
exampleGroundTruth	Example ground truth data
exampleMatrix	Example matrix data
inferCSN	Inferring Cell-Specific Gene Regulatory Network
inferCSN-method	Inferring Cell-Specific Gene Regulatory Network
inferCSN.fit	Fit a sparse regression model
is.scalar	is.scalar
net.format	Format weight table
network.heatmap	The heatmap of network
predict.inferCSN	Predict Response
predict.inferCSNCV	Predict Response
print.inferCSN	Prints a summary of inferCSN.fit
print.inferCSNCV	Prints a summary of inferCSN.fit
sparse.regression	Sparse regression model
sub.inferCSN	Sparse regression model for single gene