localScore-package | Package for sequence analysis by local score |
automatic_analysis | Automatic analysis |
CharSequence2ScoreSequence | Convert a character sequence into a score sequence |
CharSequences2ScoreSequences | Convert several character sequences into score sequences |
daudin | Daudin [p-value] [iid] |
dico | Dictionnaire |
exact_mc | Exact method for p-value [Markov chains] |
karlin | Karlin [p-value] [iid] |
karlinMonteCarlo | Monte Carlo - Karlin [p-value] |
karlinMonteCarlo_double | Monte Carlo - Karlin for real scores[p-value] |
lindley | Lindley process |
loadMatrixFromFile | Loads matrix from csv-File |
loadScoreFromFile | Load score from file |
localScore | Package for sequence analysis by local score |
localScoreC | Local score |
localScoreC_double | Local score for sequences of floating values |
LongSeq | Long protein sequence |
mcc | MCC [p-value] [iid] |
MidSeq | Protein sequence |
monteCarlo | Monte Carlo method [p-value] |
monteCarlo_double | Monte Carlo method for real score case [p-value] |
MySeqList | Several sequences |
RealScores2IntegerScores | Convert a real scores vector into an integer scores vector |
scoreDictionnary2probabilityVector | Check for missing scores values in the score distribution |
scoreSequences2probabilityVector | Empirical distribution from sequences |
sequences2transmatrix | Transition matrix from sequence(s) |
ShortSeq | Short protein sequence |
stationary_distribution | Stationary distribution [Markov chains] |
transmatrix2sequence | Sampling function for Markov chains |