Phylogenetic Structural Equation Model


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Documentation for package ‘phylosem’ version 1.0.0

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AIC.phylosem Calculate Akaike Information Criterion from marginal likelihood
as_fitted_DAG Convert output from package phylosem to phylopath
as_phylo4d Convert output from package phylosem to phylo4d object
as_sem Convert output from package phylosem to sem
average Choose model
average.compare_phylosem Choose model
best Extract best fitted model
best.compare_phylosem Extract best fitted model
choice Choose model
choice.compare_phylosem Choose model
coef.phylosem Extract path coefficients
compare_phylosem Compare phylogenetic structural equation models
fit_tmb Optimize a TMB model
list_parameters List fixed and random effects
parse_path Parse path
phylosem Fit phylogenetic structural equation model
print.phylosem Print parameter estimates
summary.phylosem Summarize phylosem
TMBAIC Calculate marginal AIC for a fitted model