C D F G H J L M N O P R S V W Z
check_names | A function check feature/group names. |
check_path | A function to deal with potentially relative paths. |
check_zonation | Check if Zonation is installed. |
clean_str | Clean leading and trailing whitespaces from a given string. Additionally, all occurrences of multiple whitespaces are replaced with a single whitespace. |
comp | Compare matrices in various ways. |
copy_zvariant | Copy existing variant as a new 'Zvariant' object. |
copy_zvariant-method | Copy existing variant as a new 'Zvariant' object. |
correlation | Correlation between two matrices. |
cost | Get cost data of a Z* object. |
cost-method | Get cost data of a Z* object. |
create_spp | Generate spp_file based on a directory of input rasters. |
create_zproject | Create a new Zonation project on file system. |
cross_jaccard | Calculate Jaccard coefficients bewteen all the RasterLayers within a single RasterStack. |
curves | Get curves results data of a Z* object. |
curves-method | Get curves results data of a Z* object. |
decimalplaces | Find out the number of decimal places in a number. |
ds_alpha | Calculate alpha value for distribution smoothing. |
featurenames | Feature names of Zonation variant. |
featurenames-method | Feature names of Zonation variant. |
featurenames<- | Feature names of Zonation variant. |
featurenames<--method | Feature names of Zonation variant. |
features_info | Get the features info component of Zresults. |
features_info-method | Get the features info component of Zresults. |
file_path_relative_to | Transform an absolute path to relative path in relation to given location |
file_path_sans_ext | Re-implementation of 'file_path_sans_ext' in 'tools'. This version can handle "." just before the file extenstion, unlike the original implementation. |
get_dat_param | Get a specified run setting parameter value |
get_dat_param-method | Get a specified run setting parameter value |
get_tutorialdir | Get the directory of Zonation tutorial. |
get_variant | Get a specified variant in a Zonation project |
get_variant-method | Get a specified variant in a Zonation project |
groupnames | Get group names for a class 'Zvariant' instance. |
groupnames-method | Get group names for a class 'Zvariant' instance. |
groupnames<- | Get group names for a class 'Zvariant' instance. |
groupnames<--method | Get group names for a class 'Zvariant' instance. |
groups | Get group codes of a class 'Zvariant' instance. |
groups-method | Get group codes of a class 'Zvariant' instance. |
groups<- | Get group codes of a class 'Zvariant' instance. |
groups<--method | Get group codes of a class 'Zvariant' instance. |
has_results | Check which results a Z* object has. |
has_results-method | Check which results a Z* object has. |
jaccard | Calculate the Jaccard coefficient. |
leaf_tags | Find all the leaf tags in a potentially nested list. The generic form of a list is tag = value; find all the tags in a list. |
load_zproject | Load a Zonation project. |
map_indexes | Map vector to actual column indexes. |
names-method | Names of variants in Zproject |
nfeatures | Get the number of feature included in a Zonation variant |
nfeatures-method | Get the number of feature included in a Zonation variant |
nvariants | Get the number of variants included in a Zonation project |
nvariants-method | Get the number of variants included in a Zonation project |
opendir | Open the directory of a Zproject using the system file browser. |
opendir-method | Open the directory of a Zproject using the system file browser. |
outdir | Get path to output directory. |
outdir-method | Get path to output directory. |
parse_bat | Parse the content of a Zonation batch (bat) file and make OS specific adjustments if needed. |
performance | Get performance levels. |
performance-method | Get performance levels. |
plot-method | Plot Zonation performance curves for individual features. |
plot-method | Plot Zonation performance curves for groups. |
plot_hist | Create a ggplot2 histogram of a 'RasterLayer'. |
ppa_lsm | Get ppa.lsm results data of a Z* object. |
ppa_lsm-method | Get ppa.lsm results data of a Z* object. |
print-method | Print Zvariant information. |
rank_raster | Get Zonation result rank raster. |
rank_raster-method | Get Zonation result rank raster. |
rank_rasters | Get Zonation result rank rasters of a project. |
rank_rasters-method | Get Zonation result rank rasters of a project. |
read_bat | Read Zonation-specific (MS Windows) batch file. |
read_curves | Read in performance curves produced by Zonation. |
read_dat | Read a dat file (Windows-style ini-file) for configuration information. |
read_features_info | Read a features info file. |
read_groups | Read a groups file. |
read_grp_curves | Read in performance curves for grouped features produced by Zonation. |
read_ppa_lsm | Read Zonation post-processing analysis (ppa) result file. |
read_result_rasters | Read Zonation-specific raster result files. |
read_spp | Read Zonation variant specific spp-file. |
regroup_curves | Re-calculate group curves data. |
require_package | Requires a given package and if not present installs and loads it. |
results | Getter method for results ('Zresults') in a class 'Zvariant' object. |
results-method | Getter method for results ('Zresults') in a class 'Zvariant' object. |
run_bat | Try to run a given batch (bat) files. |
save_zvariant | Saves the current state of an instance of 'Zvariant-class' on the file system. 'Zvariant' object tracks the location of relevant files, but the root path can be changed. If it is not changed, then the current files can be overwritten. |
save_zvariant-method | Saves the current state of an instance of 'Zvariant-class' on the file system. 'Zvariant' object tracks the location of relevant files, but the root path can be changed. If it is not changed, then the current files can be overwritten. |
selection_coverage | Intersection of two coverages. |
set_dat_param | Set a specified run setting parameter value |
set_dat_param-method | Set a specified run setting parameter value |
show-method | Print Zvariant information. |
sppdata | Simple getter mehtod for spp data in a class 'Zvariant'object. |
sppdata-method | Simple getter mehtod for spp data in a class 'Zvariant'object. |
sppdata<- | Simple getter mehtod for spp data in a class 'Zvariant'object. |
sppdata<--method | Simple getter mehtod for spp data in a class 'Zvariant'object. |
sppweights | Get biodiversity feature weights of a Zonation variant |
sppweights-method | Get biodiversity feature weights of a Zonation variant |
sppweights<- | Get biodiversity feature weights of a Zonation variant |
sppweights<--method | Get biodiversity feature weights of a Zonation variant |
variants | Get all variants in a Zonation project |
variants-method | Get all variants in a Zonation project |
write_dat | Write a Zonation run configuration (dat) file. |
ZCurvesDataFrame | The ZCurvesDataFrame class |
ZCurvesDataFrame-class | The ZCurvesDataFrame class |
ZGroupCurvesDataFrame | The ZGroupCurvesDataFrame class |
ZGroupCurvesDataFrame-class | The ZGroupCurvesDataFrame class |
zlegend | Get various Zonation legends |
zparameters | Get all Zonation run configuration parameters. |
Zproject | The Zproject class |
Zproject-class | The Zproject class |
Zresults | The Zresults class |
Zresults-class | The Zresults class |
Zvariant | The Zvariant class |
Zvariant-class | The Zvariant class |