662ee2c273103880c913f06a735fefdf *DESCRIPTION
9402b3cc653c0190feccc4f8434eadee *NAMESPACE
9f39ff66d945574a54c83999c543b357 *NEWS.md
d4f247179db45ab15d82a200f21f44e6 *R/GSE74821.R
57fa28be7df7accb4e266c2934af5f76 *R/NACHO-package.R
32704a95af8c3ff7547cf037512031ae *R/autoplot.R
0c999dcd839383823ca0ad2e8fae31bb *R/check_outliers.R
c54633fa406566e2a68fa4ec2e828bc7 *R/deploy.R
04cb81e7e1584f89e71855b57393542b *R/factor_calculation.R
e95e90f7bc36b2b91acf7361f3b3c3d1 *R/find_housekeeping.R
50b798d8cce4af4d5d4bf720e3e774e2 *R/format_counts.R
0a3c763d9e89aa8d9cd8016725b38ffd *R/format_tag_content.R
02b1b00aab9450276245446285e06b28 *R/geometric_housekeeping.R
8e736bbbd0c20f1fea747363fa1151a9 *R/geometric_mean.R
4ef61bd3bcbc63c24fdca8f4609db706 *R/geometric_probes.R
b6ed477d73099619635750023b40a450 *R/load_rcc.R
1805383c4e3e9f565888898e54554311 *R/norm_geo.R
d62dbba424a4c6d9ff80678a11fcfc54 *R/norm_glm.R
ec307d7337a73351fdd0d7ea69062962 *R/normalise.R
34f263b34ef11e305711323da8768f10 *R/normalise_counts.R
37918dd55994d638344e684d712231bb *R/print.R
37c47163a4bcc742c0e086764281a04c *R/probe_exclusion.R
93ef5a5cc1e54aba219d3b226c5f5a52 *R/qc_features.R
af9865cdf31567b6480430b5ad3baf31 *R/qc_imaging.R
349f0a9f9b892afdaf2e589eb39b8b87 *R/qc_limit_detection.R
753b09d2d76a9d1b5a5a4669a75dc5cd *R/qc_pca.R
08972ccb318230ed79f8efd0e98f6d2a *R/qc_positive_control.R
2f4d503f4770b20793aca1c847f16fe5 *R/qc_rcc.R
075c7751d98fc01d1df12a6d609cc3a4 *R/read_rcc.R
d0bc621e6b58a0b93ea9b09e59bcbf4b *R/read_tags.R
6e2a10be854365dd0069e736c2873348 *R/render.R
a0aab7ccce0febf339c8046d6b25f4c2 *R/utils.R
ac9adf4735989c46c8101210140c5729 *R/visualise.R
037c3db683024ab8b693051aaec29cf4 *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
d4ec22ad985e7ab16e5f23951de4a86b *build/vignette.rds
619e539510dad161d4b6a046d3d68bc4 *data/GSE74821.rda
af2b11dd90e7254636950435a7450ee0 *inst/CITATION
b08dc097dceb8bda378b819971274b8f *inst/WORDLIST
7d7600e6ae80c9ffef4a43c526b1cdf6 *inst/app/app.R
86b71232a49a8d26ea33e1651cc58112 *inst/app/utils.R
795cccfa69667d5a1cedbf33ba965fd0 *inst/app/www/about-bd.md
70fbe7c023f125296c31dce515012b64 *inst/app/www/about-fov.md
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5d489cd88f932253babd39d3ab0864be *inst/app/www/about-nacho.md
81cba43c315b8c403569477a5e29cf92 *inst/app/www/about-pcl.md
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bea1e53c3a2c3f033801d31a9ac255e9 *man/GSE74821.Rd
16e35478ecd267c76887f7ba7350f8b8 *man/NACHO-package.Rd
dfa9d12c119c1fcb1f0dc67340a33b9f *man/autoplot.Rd
ed6c4c8ebc1531527e5e58d194e8e36a *man/autoplot.nacho.Rd
25b16fc43b8bc170690096d3f88068e5 *man/check_outliers.Rd
47502805c18b15a1aab9d4b0b77ab7f2 *man/deploy.Rd
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ca9d21ffa9816759c9b3bcdbfbbd392a *man/figures/app_screenshot.R
4e7c88d9934a42c3be82f4f5342eea48 *man/figures/nacho_hex.png
1b01bfa06f9e76e9b9fbcfd819b0e59e *man/load_rcc.Rd
6f6c4ada508aaae3c70fb8e4f96349c3 *man/normalise.Rd
1eed33b2decbb6dd2dad638937feb99b *man/print.nacho.Rd
9545ba35222e53b3d7037efec59f5185 *man/render.Rd
94dc4b6f70759f295a54a8cff57caa6e *man/visualise.Rd
b9c4dfadd086018c4daa1457a5613cb9 *tests/testthat.R
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189ae75a58189d6f370d1fdd3ac07a24 *tests/testthat/helper-values.R
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2716060acbaf11d72d90f6db358a6ed4 *tests/testthat/plexset_data/plexset_02_02.RCC
4c3321d0327d748220f74055705f04b8 *tests/testthat/plexset_data/plexset_03_03.RCC
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4b2c08357bb7de8e07cd96ad5674ad4d *tests/testthat/plexset_data/plexset_06_06.RCC
1f8c0557fdb1705b3d446b81154d4007 *tests/testthat/plexset_data/plexset_07_07.RCC
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fadfbf76ed229e4eb7c01a882a672ea8 *tests/testthat/plexset_data/plexset_09_09.RCC
4544f7cd4dd760bf8ffbc931133c018d *tests/testthat/plexset_data/plexset_10_10.RCC
1383357065dfec8fdf040ee39bfefe2a *tests/testthat/plexset_data/plexset_11_11.RCC
86c4c1ffb53f853688121d8269dce989 *tests/testthat/plexset_data/plexset_12_12.RCC
70122b5e79e2f71bd90cbeb2b84a2676 *tests/testthat/salmon_data/salmon_01_01.RCC
3981b3c7f060e0f6e06e21ccc4ea15c9 *tests/testthat/salmon_data/salmon_02_02.RCC
52b9f8b01777e6b38e986702461e3386 *tests/testthat/salmon_data/salmon_03_03.RCC
076926663bf0df0d1216af4ced03a079 *tests/testthat/salmon_data/salmon_04_04.RCC
fd65e8611a46e5cbf9d44864577f2ea2 *tests/testthat/salmon_data/salmon_05_05.RCC
89700089e1db58597177592be82ff4fc *tests/testthat/salmon_data/salmon_06_06.RCC
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390ca3a58c892bffb0c4042c0aa9d3ba *tests/testthat/salmon_data/salmon_08_08.RCC
71fe6e379116d4de969d3e87f7b5a9ee *tests/testthat/salmon_data/salmon_09_09.RCC
067ca24441be5d043818df426c012b26 *tests/testthat/salmon_data/salmon_10_10.RCC
40974e10fc407a6f7d937a7c62bb5339 *tests/testthat/salmon_data/salmon_11_11.RCC
b207567c62f3b3e20cfa137dd4cfe354 *tests/testthat/salmon_data/salmon_12_12.RCC
a9955a8530505c1211a7b1cea7950daa *tests/testthat/test-app.R
ff2e2b4270c6a1245b39c58a10cfde87 *tests/testthat/test-autoplot.R
377238a78c33df9ac1763c45f55cc851 *tests/testthat/test-check_outliers.R
1e81d4c6a9aa3c05963ae4af0cfb81a1 *tests/testthat/test-deploy.R
6d6651e91c81dee42976208c8b6c369a *tests/testthat/test-geometric_housekeeping.R
9be85f563d06ad789bd9c684163dba15 *tests/testthat/test-load_rcc.R
cee82ded464a835ace0edc9a9ed2cef1 *tests/testthat/test-normalise.R
1a2d9c68ece6c4ad254d2cf64fcfba5c *tests/testthat/test-print.R
46cbc9b3572765eea3d2a2f26b40f886 *tests/testthat/test-render.R
0cd30106c043a5bfe3e507a3d0457fdf *tests/testthat/test-utils.R
649fa8eb0b99980fca1ffbbd0ce8522b *tests/testthat/test-values.R
82cd6f89e28d5038f20dd808b96cf9f2 *tests/testthat/test-visualise.R
b32fdd78d089f0742000f1e073f69550 *vignettes/NACHO-analysis.Rmd
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372d446bfd5579e8cd41e1cf95b1fd70 *vignettes/README-visualise.png
3c773e5070416c358b52b17635c68c70 *vignettes/nacho.bib
2a469db1311a22519d38d9a0fe15c046 *vignettes/nacho_hex.png
