gedi 2.3.1
CRAN Compliance
- Replace all
cat() / print() calls with
message() or warning() for suppressible
console output.
- Add
verbose parameters to
seurat_to_gedi(), gedi_to_seurat(),
check_optional_dependencies(), and
install_optional_dependencies().
- Replace
cat()-based progress bars with
txtProgressBar() across imputation and training
routines.
- Replace
installed.packages() with
requireNamespace() for dependency checking.
- Move
hdf5r from Imports to Suggests (optional
dependency for H5AD I/O).
- Add
ggplot2 and scales to Imports; add
uwot and digest to Suggests.
- Use CRAN-required two-line LICENSE format.
- Add
@return documentation tags to all exported and
documented functions.
- Replace non-ASCII characters in C++ source files with ASCII
equivalents.
- Remove redundant Maintainer field from DESCRIPTION.
gedi 2.3.0
- Initial public release with C++ backend and R6 interface.
- Support for multiple data modalities (count matrices, paired data,
binary indicators).
- Latent variable model with block coordinate descent
optimization.
- Dimensionality reduction, batch correction, and imputation.
- Differential expression and pathway association analysis.
- H5AD file I/O for Python interoperability.
- Seurat and SingleCellExperiment integration.