| fishtree_alignment | Get aligned sequences from the Fish Tree of Life |
| fishtree_cache_clear | Manage the Fish Tree of Life download cache |
| fishtree_cache_info | Manage the Fish Tree of Life download cache |
| fishtree_complete_phylogeny | Get complete (stochastically-resolved) phylogenies from the Fish Tree of Life |
| fishtree_phylogeny | Get a phylogeny from the Fish Tree of Life |
| fishtree_release | Get the details of a Fish Tree of Life release |
| fishtree_releases | List releases on the Fish Tree of Life |
| fishtree_rogues | Get rogue taxa that break the monophyly of defined taxa |
| fishtree_taxonomy | Get taxonomies and other data from the Fish Tree of Life |
| fishtree_tip_rates | Get tip rates for the Fish Tree of Life |