Package: inDAGO
Title: A GUI for Dual and Bulk RNA-Sequencing Analysis
Version: 1.0.4
Authors@R: c(
    person("Carmine", "Fruggiero", , "fruggierocarmine3@gmail.com", role = c("aut","cre")),
    person("Gaetano", "Aufiero", , "gaetano.aufiero@gmail.com", role = "aut")
  )
Description: A 'shiny' app that supports both dual and bulk RNA-seq, with the dual
    RNA-seq functionality offering the flexibility to perform either a
    sequential approach (where reads are mapped separately to each genome)
    or a combined approach (where reads are aligned to a single merged
    genome). The user-friendly interface automates the analysis process,
    providing step-by-step guidance, making it easy for users to navigate
    between different analysis steps, and download intermediate results
    and publication-ready plots.
License: GPL (>= 3)
URL: https://github.com/inDAGOverse/inDAGO,
        https://www.ingenitabiotech.com
BugReports: https://github.com/inDAGOverse/inDAGO/issues
Encoding: UTF-8
Imports: bsicons, bslib, callr, checkmate, data.table, dplyr, DT, fs,
        ggplot2, ggrepel, grDevices, heatmaply, Hmisc, htmltools,
        magrittr, matrixStats, memuse, methods, paletteer, parallel,
        pheatmap, plotly, R.devices, readr, reshape2, rintrojs, seqinr,
        shiny, shinycssloaders, shinyFiles, shinyjs, shinyWidgets,
        spsComps, stats, svglite, tibble, tidyr, tools, upsetjs,
        UpSetR, utils
Suggests: BiocGenerics, BiocManager, Biostrings, edgeR, harrypotter,
        HTSFilter, limma, oompaBase, palr, Rsamtools, Rsubread,
        rtracklayer, S4Vectors, ShortRead, testthat (>= 3.0.0), XVector
Config/testthat/edition: 3
Author: Carmine Fruggiero [aut, cre],
  Gaetano Aufiero [aut]
Maintainer: Carmine Fruggiero <fruggierocarmine3@gmail.com>
Config/roxygen2/version: 8.0.0
NeedsCompilation: no
Packaged: 2026-08-20 09:19:08 UTC; gaeta
Repository: CRAN
Date/Publication: 2026-08-21 08:50:08 UTC
Built: R 4.5.2; ; 2026-08-21 09:15:36 UTC; unix
