# The R Genome Browser

## Documentation for package ‘Rgb’ version 1.7.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

Annotation | Annotation track constructors
browsePlot | R Genome browser
crossable-class | Class '"crossable"'
draw.bg | Background for track plots
draw.boxes | Boxes plot of a track
draw.density | Two-dimensional density plot of a track
draw.hist | Histogram plot of a track
draw.pileup | Pileup plot of a BAM track
draw.points | Scatter plot of a track
draw.seq | Plot a sequence of nucleotides
draw.steps | Stairway plot of a track
drawable-class | Class '"drawable"'
drawable.list | Drawable list constructor
drawable.list-class | Class '"drawable.list"'
findDrawables | Find drawable objects in memory
handle | Tk interface utilities
hsBands | Homo sapiens GRCh37 chromosome banding
hsGenes | Subset of Homo sapiens GRCh37 genes
istrack | Extract elements within a genomic window
read.gtf | Parses a GTF2 file
readRDT | Single refTable object storage
refTable | refTable class constructor
refTable-class | Class '"refTable"'
saveRDT | Single refTable object storage
segMerge | Merges consecutive segments
segOverlap | Merges overlapping segments
singlePlot | Whole genome plot of a drawable list
sizetrack | Extract elements within a genomic window
sliceable-class | Class '"sliceable"'
subtrack | Extract elements within a genomic window
tk.browse | R Genome browser
tk.convert | RDT file conversion
tk.file | Tk interface utilities
tk.files | Tk interface utilities
tk.folder | Tk interface utilities
tk.tracks | Track management for Genome browser
track-constructors | Track constructors
track.bam | Track constructors
track.bam-class | Class '"track.bam"'
track.bands | Track constructors
track.bands-class | Class '"track.bands"'
track.bands.UCSC | Annotation track constructors
track.CNV | Track constructors
track.CNV-class | Class '"track.CNV"'
track.CNV.DGV | Annotation track constructors
track.exons | Track constructors
track.exons-class | Class '"track.exons"'
track.exons.CCDS | Annotation track constructors
track.exons.GENCODE | Annotation track constructors
track.fasta-class | Class '"track.fasta"'
track.fasta-constructors | Track constructors for FASTA files
track.fasta.collection | Track constructors for FASTA files
track.fasta.multi | Track constructors for FASTA files
track.genes | Track constructors
track.genes-class | Class '"track.genes"'
track.genes.NCBI | Annotation track constructors
track.table | Track constructors
track.table-class | Class '"track.table"'
track.table.GTF | Annotation track constructors
yline | Compute Y line to avoid collision