# Global and Local Admixture Inference in Polyploids

## Documentation for package ‘AdmixPoly’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

AdmixPoly-package | AdmixPoly: Global and Local Admixture Inference in Polyploids
AdmixGlobal | Expectation-Maximization algorithm for global (genome-wide) admixture inference
AdmixLocal | Forward-Backward algorithm for local admixture inference
AdmixPoly | AdmixPoly: Global and Local Admixture Inference in Polyploids
ComputeLogLik | Calculate the log-likelihood
GlobalPlot | Plot global admixture proportions
LocalPlot | Plot local ancestry dosages
ReadHPA | Read Haplotype Presence-Absence (HPA) file
ReadVCF | Read VCF file
SimulatePop | Simulate an admixed polyploid population characterized for multi-allelic markers
UpdateParam | Update Prop and Freq parameters for EM step