HRRI_workflow_example   Worked example: a complete HRRI workflow
attach_hrri_ids         Attach design identifiers to a score table with
                        explicit alignment checks
benchmark_hrri          Benchmark diagnostic agreement with a
                        simulator-defined target
hrri_infer_architecture
                        Fit a conditional capacity-recovery curve
                        (legacy function name)
plot_RRI_ternary        Ternary Plot of Relative Domain Scores
plot_hrri_benchmark     Plot descriptive benchmark agreement
plot_rri_accuracy       Four-panel diagnostic figure for an accuracy
                        assessment
plot_rri_properties     Radar Chart of Available HRRI Diagnostics
plot_rri_recovery_landscape
                        Plot a recovery landscape from RRI
                        perturbation-recovery metrics
plot_rri_recovery_map   Plot RRI Recovery Map
plot_rri_simulation_demo
                        Draw the reproducible simulation demonstration
plot_rri_state_space    Plot domain-score space with correctly matched
                        trajectory diagnostics
plot_rri_timeseries     Aligned time series with separate physical
                        units
plot_rri_validation     Scatter of HRRI score against a
                        simulator-defined target
rri_accessible_capacity
                        Event-window accessible reservoir capacities
rri_accuracy            Agreement between a score and a reference
                        target, respecting clustering
rri_capacity_index      Oxidative-oriented soil feature composite
rri_compensation_index
                        Cross-domain asynchrony diagnostic
rri_connectivity_score
                        Cross-domain association or graph-topology
                        summary
rri_default_reservoirs
                        Illustrative reservoir parameter template
rri_domain_influence    Realised influence of each domain on the
                        composite score
rri_kinetics_score      Descriptive recovery speed score
rri_latent_correlation
                        Correlation with a Simulator-Defined Target
rri_memory_index        Persistent-displacement and loop-area
                        diagnostic
rri_micro_functional_score
                        Construct an explicitly weighted microbial
                        guild contrast
rri_o2_demand           Stoichiometric O_2 Demand from Reduced-Pool
                        Inventories
rri_pipeline            Score observed soil, plant and microbial panels
rri_pipeline_st         Exploratory domain-score integration (legacy
                        interface)
rri_property_scores     Summarise supported diagnostics without
                        fabricating missing properties
rri_recovery_metrics    Descriptive recovery metrics for a single
                        disturbance
rri_reference_scores    Score departures from an explicitly defined
                        reference
rri_root_physio         Exploratory root-trait composite
rri_sensitivity         Sensitivity to domain aggregation weights
rri_simulation_demo     Reproducible observable-only HRRI demonstration
simulate_redox_holobiont
                        Simulate illustrative soil-plant-microbe redox
                        trajectories
theme_ems               EMS plotting theme
