Marine Source Unmixing Toolkit
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Documentation for package ‘OceanTracer’ version 1.0.2
Help Pages
| aa_baseline_correction | Amino Acid Isotopic Baseline Correction |
| artificial_dataset | Artificial Dataset for OceanTracer Workflows |
| boxPlot | Box and Whiskers Plot for Tracers |
| box_plot | Box and Whiskers Plot for Tracers |
| CB_Method | Conservative Balance (CB) transformation for isotopic tracers |
| cb_method | Conservative Balance (CB) transformation for isotopic tracers |
| CI_Method | Conservativeness Index (CI) for individual tracer evaluation |
| cluster_solutions | Cluster CTS solutions by source contribution similarity |
| Conservative_Balance | Conservative Balance (CB) transformation for isotopic tracers |
| consistency_error | Consistency error of a tracer selection for an apportionment solution |
| correlationPlot | Correlation matrix chart |
| Correlation_Chart | Correlation matrix chart |
| correlation_plot | Correlation matrix chart |
| CR | Consensus Ranking (CR) method for tracer selection |
| CR_Method | Consensus Ranking (CR) method for tracer selection |
| cr_ns | Consensus Ranking (CR) method for tracer selection |
| CTS_2_sources | CTS Engine for 2 Sources |
| CTS_3_sources | CTS Engine for 3 Sources |
| CTS_4_sources | CTS Engine for 4 Sources |
| CTS_5_sources | CTS Engine for 5 Sources |
| CTS_error | Consistency error of a tracer selection for an apportionment solution |
| cts_error | Consistency error of a tracer selection for an apportionment solution |
| CTS_n_sources | Consistent Tracer Selection (CTS) for multiple sources |
| CTS_seeds | Consistent Tracer Selection (CTS) for multiple sources |
| CTS_seeds_pairs | CTS Engine for 3 Sources |
| CTS_seeds_quartets | CTS Engine for 5 Sources |
| CTS_seeds_singles | CTS Engine for 2 Sources |
| CTS_seeds_triplets | CTS Engine for 4 Sources |
| DFATest | Discriminant Function Analysis for tracer pre-selection |
| frequentist_unconstrained | Source apportionment via unconstrained least-squares with classical variability propagation |
| frequentist_unconstrained_lvp | Source apportionment via unconstrained least-squares with linear variability propagation (LVP) |
| ggbiplot | Biplot for Principal Components using ggplot2 |
| Graph_boxplots | Box and Whiskers Plot for Tracers |
| inputMixture | Extract mixture samples from a fingerprinting dataset |
| inputSample | Extract mixture samples from a fingerprinting dataset |
| inputSource | Input Sediment Sources |
| KWTest | Kruskal-Wallis test for tracer pre-selection |
| LDAPlot | Linear Discriminant Analysis Chart |
| LDA_Chart | Linear Discriminant Analysis Chart |
| LDA_plot | Linear Discriminant Analysis Chart |
| pairs | CTS Engine for 3 Sources |
| PCAPlot | Principal Component Analysis biplot |
| PCA_plot | Principal Component Analysis biplot |
| plotResults | Plot Apportionment Results |
| plot_apportionment | Plot Apportionment Results |
| plot_pca | Principal Component Analysis biplot |
| plot_results | Plot Apportionment Results |
| prefilter_tracers | Prefilter tracers and clean raw or summary source datasets |
| quartets | CTS Engine for 5 Sources |
| rangeTest | Range test for tracer pre-selection |
| singles | CTS Engine for 2 Sources |
| Ternary_diagram | Ternary diagrams with the CI_Method function results |
| ternary_diagram | Ternary diagrams with the CI_Method function results |
| Ternary_Plot | Ternary diagrams with the CI_Method function results |
| tracer_pull_analysis | Analyze the Marginal Effect (Pull) of Individual Tracers |
| tracer_selection_diagnostic_plot | Tracer Selection Diagnostic plot |
| triangles_dataset | Conservative Index evaluation using randomly sampled companion tracers |
| triangles_virtual | Conservative Index evaluation using virtually generated companion tracers |
| triplets | CTS Engine for 4 Sources |
| unmixing | Unmix sediment or marine particle mixtures |
| unmix_mixsiar | Bayesian Source Apportionment using MixSIAR |