# Bayesian Transmission Models

## Documentation for package ‘bayestransmission’ version 0.1.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ABXInUnitParams | In Unit Parameters
AbxParams | Antibiotic Parameters
AbxRateParams | Antibiotic Administration Rate Parameters
ClearanceParams | Clearance Parameters
ClinicalTestParams | Random Testing Parameter Set
CodeToEvent | Convert coded events to string events
EventToCode | Convert string events to coded events
getCppModelParams | Extract Model Parameters from C++ Model Object
getExposureFlags | Get compilation flags for exposed classes
InsituParams | InSitu Parameters
InUnitParams | In Unit Parameters
LinearAbxAcquisitionParams | Linear Antibiotic Acquisition Parameters
LinearAbxModel | Model Parameters for a Log Normal Model
LogNormalAcquisitionParams | Log-Normal Acquisition Parameters
LogNormalModelParams | Model Parameters for a Log Normal Model
mcmc_to_dataframe | Convert MCMC Parameters to Data Frame
newCppModel | Create a new C++ model object with parameters
newModelExport | Create a new model object
OutOfUnitInfectionParams | Out of Unit Infection Parameters
Param | Construct a parameter with a prior, weight and an update flag.
ParamWRate | Specify a random testing parameter with a rate.
ProgressionParams | Progression Parameters
RandomTestParams | Random Testing Parameter Set
runMCMC | Run Bayesian Transmission MCMC
simulated.data | Simulated Transmission Data
simulated.data_sorted | Simulated Transmission Data (Sorted)
SurveillanceTestParams | Surveillance Test Parameters