Processing of 'CARWatch' Sampling Logs and Saliva Data

---

Documentation for package ‘carwatch’ version 1.0.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_sample_events	Extract the explicit sample-level table
as_study_days	Extract the explicit day-level table
auc	Compute area under the curve with respect to ground and increase
compute_features	Compute the standard CARWatch saliva response feature set
compute_features_from_carwatch	Compute CARWatch saliva features using sample position and actual time
conversion_report_editor	Edit conversion decisions interactively
convert_raw_logs	Convert immutable CARWatch raw logs to canonical Study Results
drop_non_compliant_samples	Remove non-compliant observations
extract_registration_schedule	Extract the registration-aware protocol schedule
find_non_compliant_samples	Identify non-compliant samples
find_sampling_anomalies	Identify tube and day mismatches
generate_synthetic_study_data	Generate deterministic local CARWatch example data
initial_value	Return the initial value in each saliva curve
interactive_sampling_timeline	Open an interactive participant-day sampling timeline
max_increase	Compute maximum increase from the initial sample
max_value	Compute the maximum measured value in each saliva curve
mean_se	Compute mean and standard error by sample
merge_saliva	Merge laboratory saliva values into canonical Study Results
new_carwatch_results	Construct canonical CARWatch results
new_sampling_compliance_checker	Configure CARWatch sampling-compliance tolerances
plot_compliance_overview	Plot cohort sampling compliance
plot_saliva_curve	Plot CARWatch-aligned saliva response curves
plot_sampling_timeline	Plot an individual sampling timeline
plot_timing_deviation	Plot signed sampling-time deviations
read_conversion_report	Read a conversion-issue report CSV
read_manual_diary	Read a manual measurement diary
read_raw_logs	Read CARWatch raw log files
read_raw_logs_from_participant_dirs	Read raw logs from one explicitly mapped folder per participant
read_saliva	Read a BioPsyKit-style saliva CSV
read_study_manager_export	Read a flat CARWatch Study Manager export
read_study_results	Read canonical CARWatch Study Results
saliva_feature_wide_to_long	Convert wide saliva features to an analysis-friendly long table
sample_times_datetime_to_minute	Convert clock-time sample columns to minutes from the first sample
slope	Compute the slope between two saliva samples
standard_features	Summarize descriptive saliva features
summarize_compliance	Summarize sampling compliance
summarize_protocol	Summarize the reconstructed study protocol
summarize_source_audit	Compactly summarize a source audit
write_conversion_report	Write an editable conversion report
write_study_results	Write canonical CARWatch Study Results