# Generated by roxygen2: do not edit by hand

S3method(coef,gllvmTMB_julia)
S3method(coef,gllvmTMB_multi)
S3method(coef,gllvmTMB_va)
S3method(confint,gllvmTMB_julia)
S3method(confint,gllvmTMB_multi)
S3method(confint,gllvmTMB_va)
S3method(deviance,gllvmTMB_multi)
S3method(deviance,gllvmTMB_va)
S3method(df.residual,gllvmTMB_va)
S3method(fitted,gllvmTMB_julia)
S3method(fitted,gllvmTMB_multi)
S3method(fitted,gllvmTMB_va)
S3method(imputed,gllvmTMB)
S3method(logLik,gllvmTMB_julia)
S3method(logLik,gllvmTMB_multi)
S3method(logLik,gllvmTMB_va)
S3method(ordiplot,gllvmTMB_multi)
S3method(plot,gllvmTMB_multi)
S3method(plot,gllvmTMBmesh)
S3method(plot,profile_derived)
S3method(plot,profile_loadings)
S3method(plot,sdmTMBmesh)
S3method(predict,gllvmTMB_julia)
S3method(predict,gllvmTMB_multi)
S3method(predict,gllvmTMB_va)
S3method(print,gllvmTMB_Sigma_phy_slope)
S3method(print,gllvmTMB_check_consistency)
S3method(print,gllvmTMB_confint_inspect)
S3method(print,gllvmTMB_coverage_study)
S3method(print,gllvmTMB_identifiability)
S3method(print,gllvmTMB_julia)
S3method(print,gllvmTMB_multi)
S3method(print,gllvmTMB_reportable_table)
S3method(print,gllvmTMB_ridge_path)
S3method(print,gllvmTMB_screen)
S3method(print,gllvmTMB_slope_ci)
S3method(print,gllvmTMB_va)
S3method(print,summary.gllvmTMB_julia)
S3method(print,summary.gllvmTMB_multi)
S3method(print,summary.gllvmTMB_va)
S3method(residuals,gllvmTMB_julia)
S3method(residuals,gllvmTMB_multi)
S3method(residuals,gllvmTMB_va)
S3method(simulate,gllvmTMB_julia)
S3method(simulate,gllvmTMB_multi)
S3method(stats::nobs,gllvmTMB_multi)
S3method(stats::nobs,gllvmTMB_va)
S3method(stats::weights,gllvmTMB_va)
S3method(summary,gllvmTMB_julia)
S3method(summary,gllvmTMB_multi)
S3method(summary,gllvmTMB_va)
S3method(tidy,gllvmTMB_multi)
S3method(vcov,gllvmTMB_multi)
S3method(vcov,gllvmTMB_va)
export(.proportions_bootstrap_ci)
export(.proportions_wald_ci)
export(Beta)
export(VP)
export(add_utm_columns)
export(animal_dep)
export(animal_indep)
export(animal_latent)
export(animal_scalar)
export(animal_slope)
export(animal_unique)
export(betabinomial)
export(block_V)
export(bootstrap_Sigma)
export(categorical)
export(censored_poisson)
export(check_auto_residual)
export(check_gllvmTMB)
export(compare_Sigma_table)
export(compare_dep_vs_two_psi)
export(compare_indep_vs_two_psi)
export(compare_loadings)
export(confint_inspect)
export(confirmatory_lambda)
export(cumulative_logit)
export(delta_beta)
export(delta_gamma)
export(delta_gamma_mix)
export(delta_gengamma)
export(delta_lognormal)
export(delta_lognormal_mix)
export(delta_poisson_link_gamma)
export(delta_poisson_link_lognormal)
export(delta_truncated_nbinom1)
export(delta_truncated_nbinom2)
export(dep)
export(diagnose_kernel_separability)
export(diagnostic_table)
export(extract_Gamma)
export(extract_ICC_site)
export(extract_Omega)
export(extract_Sigma)
export(extract_Sigma_B)
export(extract_Sigma_W)
export(extract_Sigma_table)
export(extract_coevolution_modules)
export(extract_communality)
export(extract_correlations)
export(extract_cross_correlations)
export(extract_cutpoints)
export(extract_loadings)
export(extract_lv_effects)
export(extract_ordination)
export(extract_phylo_signal)
export(extract_proportions)
export(extract_repeatability)
export(extract_residual_cor)
export(extract_residual_cov)
export(extract_residual_split)
export(extract_rotated_loadings_table)
export(flag_unreliable_loadings)
export(gamma_mix)
export(gengamma)
export(getLV)
export(getLoadings)
export(getREsd)
export(getResidualCor)
export(getResidualCov)
export(get_crs)
export(gllvmTMB)
export(gllvmTMB_check_consistency)
export(gllvmTMB_diagnose)
export(gllvmTMB_wide)
export(gllvmTMBcontrol)
export(gllvm_julia_fit)
export(gllvm_julia_setup)
export(gr)
export(impute_model)
export(imputed)
export(indep)
export(isdm_source)
export(isdm_sources)
export(kernel_dep)
export(kernel_indep)
export(kernel_latent)
export(kernel_scalar)
export(kernel_unique)
export(latent)
export(loading_ci)
export(loading_profile)
export(lognormal)
export(lognormal_mix)
export(make_cross_kernel)
export(make_mesh)
export(meta)
export(meta_V)
export(meta_known_V)
export(miss_control)
export(multinomial)
export(nbinom1)
export(nbinom2)
export(nbinom2_mix)
export(ordinal_probit)
export(ordiplot)
export(pedigree_to_A)
export(pedigree_to_Ainv_sparse)
export(phylo)
export(phylo_dep)
export(phylo_indep)
export(phylo_latent)
export(phylo_rr)
export(phylo_scalar)
export(phylo_signal_mi)
export(phylo_slope)
export(phylo_unique)
export(plot_Sigma_comparison)
export(plot_Sigma_heatmap)
export(plot_Sigma_table)
export(plot_anisotropy)
export(plot_anisotropy2)
export(plot_correlations)
export(plot_loadings_confidence_eye)
export(plot_rotated_loadings)
export(predict_cross_covariance)
export(predict_missing)
export(predictive_check)
export(profile_ci_phylo_signal)
export(profile_ci_total_variance)
export(profile_cross_rho)
export(profile_cross_rho_ci)
export(profile_phylo_signal)
export(profile_targets)
export(ridge_path)
export(rotate_loadings)
export(sanity_multi)
export(scalar)
export(screen_control)
export(screen_gllvmTMB)
export(screen_table)
export(simulate_site_trait)
export(simulate_unit_trait)
export(slope_sd_ci)
export(spatial)
export(spatial_dep)
export(spatial_indep)
export(spatial_latent)
export(spatial_scalar)
export(spatial_unique)
export(spde)
export(standard_errors)
export(student)
export(suggest_lambda_constraint)
export(suggest_lambda_constraints)
export(tidy)
export(tmbprofile_wrapper)
export(traits)
export(truncated_nbinom1)
export(truncated_nbinom2)
export(truncated_poisson)
export(tweedie)
if (requireNamespace("gllvm", quietly = TRUE)) S3method(gllvm::ordiplot, gllvmTMB_multi)
importFrom(assertthat,assert_that)
importFrom(cli,cli_abort)
importFrom(cli,cli_inform)
importFrom(cli,cli_warn)
importFrom(generics,tidy)
importFrom(methods,as)
importFrom(rlang,.data)
importFrom(stats,Gamma)
importFrom(stats,as.formula)
importFrom(stats,binomial)
importFrom(stats,coef)
importFrom(stats,dnorm)
importFrom(stats,fitted)
importFrom(stats,gaussian)
importFrom(stats,model.frame)
importFrom(stats,plogis)
importFrom(stats,predict)
importFrom(stats,residuals)
importFrom(stats,setNames)
importFrom(stats,simulate)
useDynLib(gllvmTMB, .registration = TRUE)
