Perform Phylogenetic Path Analysis

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Documentation for package ‘phylopath’ version 1.4.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as.data.frame.fitted_DAG	Extract the paths of a fitted causal model.
average	Extract and average the best supported models from a phylogenetic path analysis.
average_DAGs	Perform model averaging on a list of DAGs.
best	Extract and estimate the best supported model from a phylogenetic path analysis.
choice	Extract and estimate an arbitrary model from a phylogenetic path analysis.
cichlids	Cichlid traits and the evolution of cooperative breeding.
cichlids_tree	Cichlid phylogeny.
coef.fitted_DAG	Extract the coefficients and confidence intervals of a fitted causal model.
coef_plot	Plot path coefficients and their confidence intervals or standard errors.
confint.fitted_DAG	Extract the coefficients and confidence intervals of a fitted causal model.
DAG	Directed acyclic graphs (DAGs)
define_model_set	Define a model set.
est_DAG	Estimate path coefficients for a DAG.
phylo_path	Compare causal models in a phylogenetic context.
plot.DAG	Plot a directed acyclic graph.
plot.fitted_DAG	Plot a directed acyclic graph with path coefficients.
plot.phylopath_summary	Plot the comparison of a set of causal models.
plot_model_set	Plot several causal hypothesis at once.
red_list	Data on brain size, life history and vulnerability to extinction
red_list_tree	Mammalian phylogeny
rhino	Rhinogrades traits.
rhino_tree	Rhinogrades phylogeny.
show_warnings	Print out warnings from a phylopath analysis.