Spectral Network Quantitative Trait Loci (snQTL) Analysis

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Documentation for package ‘snQTL’ version 0.2

• DESCRIPTION file.

Help Pages

as.tensor	Tensor Conversion
BinarySearch	Search soft threshold
cs_unfold	Tensor Column Space Unfolding
cs_unfold-method	Tensor Column Space Unfolding
cs_unfold-methods	Tensor Column Space Unfolding
diffnet_to_snQTL_stats	Test statistics for snQTL
dim-method	Mode Getter for Tensor
dim-methods	Mode Getter for Tensor
fold	General Folding of Matrix
get_diffnet_from_exp	The differential matrix
get_diffnet_list_from_exp	Get the list of differential matrix from a list of expression data
kronecker_list	List Kronecker Product
l2n	L2 norm for vector
Ops-method	Conformable elementwise operators for Tensor
Ops-methods	Conformable elementwise operators for Tensor
rand_tensor	Tensor with Random Entries
rs_unfold	Tensor Row Space Unfolding
rs_unfold-method	Tensor Row Space Unfolding
rs_unfold-methods	Tensor Row Space Unfolding
single_exp_to_snQTL_stats	Generate one single snQTL test statistics from expression data
sLME	Calculate of sLME for matrices
snQTL_test_corrnet	Spectral network quantitative trait loci (snQTL) test
soft	Soft threshold
solvePMD	Solving symmetric Penalized Matrix Decomposition
SSTD_R1	Sparse Symmetric Tensor Decomposition (SSTD)
symmPMD	Symmetric Penalized Matrix Decomposition.
Tensor	S4 Class for a Tensor
Tensor-class	S4 Class for a Tensor
ttl	Tensor Times List
ttm	Tensor Matrix Product (m-Mode Product)
unfold	Tensor Unfolding
unfold-method	Tensor Unfolding
unfold-methods	Tensor Unfolding