Bootstrap Prediction Uncertainty and Its Biological Drivers in Gene-Expression Models

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Documentation for package ‘uncertR’ version 0.1.3

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

boot_uncertainty	Bootstrap ensemble with out-of-bag predictions
clr_transform	Centered log-ratio transform for compositional fractions
collapse_rare_levels	Collapse rare factor levels
tumor_covariates	Assemble covariates that may drive uncertainty
uncertainty_drivers	Which covariates explain prediction uncertainty?
uncertainty_score	Per-sample uncertainty score from OOB predictions
validate_uncertainty	Does the uncertainty score track real error?