Bayesian Compartmental Infection Models from Individual Outcomes

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Documentation for package ‘hestia’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

hestia-package	The 'hestia' package.
get_transmission_details	Create Transmission Probability Matrix
hestia	The 'hestia' package.
make_infection_model	Build Infection Process Model
make_observation_model	Make Observation Process Model
progress	Define a non-infection transition
run_model	Run Household Transmission Model
siir	Simulated SIIR household data
siir_res	Fitted draws for the SIIR model
sir	Simulated SIR household data
sir_cov	Simulated SIR household data with covariates
sir_cov_res	Fitted draws for the SIR model with covariates
sir_res	Fitted draws for the basic SIR model
transmit	Define a infection transition