CohenKappa              Compute Cohen's Kappa Coefficient
LCZareas                Computes the area of each level of a LCZ
LCZlevelToOrderedString
                        To make LCZ types appear in the proper order,
                        it can be useful ton convert them into strings
                        with added zeros
addMissingRSUs          adds missing Reference Spatial Units
                        (geometries) from the difference with a
                        reference zone file, and possibly add a value
                        to the lcz column according to a reference
                        workflow reference spatial units nor
                        represented by their own geometries adding a
                        column for location and workflow names
aggregateRSUsByLCZ      For an sf object containing LCZ types,
                        aggregates touching geometries with same value
                        of LCZ
areColors               Checks if a string or a vector of strings
                        define colors in R
barplotLCZaLocation     in a given directory, if several LCZ files are
                        present, plots the repartition of LCZ regarding
                        of their source (workflow) NOTE: to represent
                        the map of LCZ for a given file, use 'showLCZ'
                        function instead
barplotLCZfromIntersect
                        plots the repartition of LCZ types regarding of
                        their source (map/workflow) from an sf object
                        containing all spatial units and LCZ value,
                        typically the output of createIntersect
checkColnameCase        Checks if the columns entered by the user match
                        the columns in the data source
checkDirSlash           Simply adds a slash at then end of a directory
                        path if there is none
checkWorkflowName       Checks if a character string can be used as a
                        workflow name and corrects it if it contains
                        spaces or underscores
compareLCZ              Compares two sets of geographical
                        classifications, especially Local Climate Zones
                        classifications
compareMultipleLCZ      Compares several sets of geographical
                        classifications, especially Local Climate Zones
                        classifications
completeDT              creates a complete data.table from the cross
                        cases of the specified columns
computeAgreements       compute agreements between several LCZ maps
computeConsensus        Compute an indicator of consensus among
                        workflows for each LCZ type
concatAllLocsWorkflows
                        importConcatMultipleLocsLCZvect is recommended
                        instead as it loadsand concatenate input files
                        and can even fill missing geometries with
                        "unclassified" type. But if maps are already
                        loaded in a List, concatAllLocsWorkflows is the
                        equivalent of concatenateAlocationWorkflows,
                        but for several Locations Take a list of
                        locations, each list contains a list of sf
                        files with an lcz_primary column, and
                        concatenates them into a single sf object,
                        adding a column for location and workflow names
concatAlocationWorkflows
                        Take a list of sf files with lcz_primary and wf
                        columns, and concatenates them in a single sf
                        object, adding a column for location and
                        workflow names
concatIntersectedLocations
                        In a given directory (or a list of directories)
                        the function looks for LCZ datafiles,
                        intersects them and return a dataset with
                        intersected geometries and LCZ values for each
                        workflow
confidSensib            Computes the agreement between geographical
                        (LCZ) classifications on a range of values of
                        an indicator of confidence granted to each LCZ
                        classification. The input file or dataset must
                        have been produced by compareLCZ function, or
                        at least the columns must be in the same order
createIntersect         Intersects multiple sf files in which Local
                        Climate Zones are set for polygon geometries
createWeightedFlux      Takes an sf object with several workflow
                        values, and creates all pairwise confusion
                        matrices, then conatenates them in long form,
                        usable to plot chord diagrams
drawChordDiagram        Draws how LCZ types from several workflows
                        break up into LCZ types of one another
drawChordDiagramWithGrouping
                        Draws how LCZ types from several workflows
                        break up into LCZ types of one another when
                        some grouping is precised in the arguments
drawSectors             Draws sectors and groups inside the
                        drawChordDiagram function
fetchLCZ                Deprecated DO NOT USE, kept in case some users
                        might need it Fetches LCZ classification data,
                        by default from the Geomanum cloud, for
                        locations already uploaded there by the
                        Geoclimate team
geoClimateCall          Calls GeoClimate jar file and feeds it a
                        configuration file by building a command an
                        using system (only tested on linux)
geoClimateConfigFile    Builds a JSON configuration file for GeoClimate
                        workflow.
groupLCZ                Allows to group (Local Climate Zone)
                        geographical classification levels into broader
                        categories to explore classification agreements
groupLCZsuffix          Regroups levels of origin and destination of a
                        multiple confusion matrix in long form.
importConcatMultipleLocsLCZvect
                        In a given list of directories the function
                        looks for LCZ datafiles, return a datasets LCZ
                        values for each geom and workflow
importLCZgc             Imports the wf_lcz fgb file produced by
                        GeoClimate. Not recommended. Use the more
                        generic importLCZvect function
importLCZraster         Imports the LCZ classifications produced on
                        raster maps. For now, the european tif map
                        produced by WUDAP is used as a reference
                        example. Users can DOWNLOAD the WUDAPT tif file
                        at the following url :
                        https://figshare.com/articles/dataset/European_LCZ_map/13322450
importLCZvect           Imports Local Climate Zone classifications from
                        a vector source, a geographical file or an sf
                        object from the current R session
importLCZvectFromFile   Imports Local Climate Zone classifications from
                        a standard geographical file (tested : geojson,
                        shp, more to come)
importLCZvectFromSf     Imports Local Climate Zone classifications from
                        an existing sf object
importMultipleLCZvect   In a given directory (or a list of directories)
                        the function looks for LCZ datafiles and load
                        them in a list. In each directory, files must
                        have names built as follow :
                        wf_lcz.fileExtension, where wf are the values
                        specified in workflowNames parameter and
                        fileExtension is a file extension known by sf
                        drivers, like fgb, geojson...
importMultipleLCZvectFromSession
                        Take a list of sf objects within the session
                        and format them to allow the use of
                        createIntersect and multipleCompare functions.
importMultipleLocsLCZvect
                        In a given directory the function looks
                        different locations as subdirectories and LCZ
                        datafiles in each subdirectory, and load them
                        in a list In each directory, files must have
                        names built as follow : wf_lcz.fileExtension,
                        where wf are the values specified in
                        workflowNames parameter and fileExtension is a
                        file extension known by sf drivers, like fgb,
                        geojson...
importQualVar           Imports a qualitative variable associated with
                        polygons from a geographical dataset (tested :
                        geojson, shp, more to come)
intersectAlocation      DEPRECATED: use concatIntersectedLocations with
                        the proper arguments Intersects several sf
                        files for a given location identified by a
                        given directory path and name
levCol                  Manages the levels and the colors of the LCZ
                        columns
makeSectorsAndGroups    Creates sectors and groups for the
                        drawChordDiagram function
matConfLCZ              Produces a confusion matrix between two sets of
                        lcz on the same area (geoms do not need to be
                        the same)
matConfLCZGlob          Compares two LCZ classifications on several
                        locations
matConfPlot             Plots a tile graph of a confusion matrix
                        between two sets of lcz on the same area
plotSankeyfiedLCZ       Plots a sankey graph between two LCZ workflows
plotSummarisedRSUs      For a given LCZ sf object, plots the number of
                        geometries and an average area indicator per
                        level of LCZ
prepareSankeyLCZ        Prepares the data to produce a sankey graph
                        between two LCZ workflows
redonBDT                RedonBDT
redonOSM                RedonOSM
showAlterLCZ            Produces a simple representation of the LCZ
                        contained in an sf file with non standard LCZ
                        type encoding
showLCZ                 Produces a simple representation of the LCZ
                        contained in an sf file
showStandardLCZ         Produces a simple representation of the LCZ
                        contained in an sf file when standard LCZ type
                        format is used
standLevCol             Detects standard LCZ levels and associate
                        standard colors to them
summariseRSUs           For a given LCZ sf object, returns the number
                        of geometries and their mean area per LCZ type
workflowAgreeAreas      From the output of compare multiple, cmputes
                        which workflows agree the most regarding the
                        area of agreement
