nprcgenekeepr-package	nprcgenekeepr-package
addAnimalsWithNoRelative	addAnimalsWithNoRelative
addBackSecondParents	addBackSecondParents
addGenotype	addGenotype
addIdRecords	addIdRecords
addParents	addParents
addSexAndAgeToGroup	addSexAndAgeToGroup
addUIds	addUIds
alleleFreq	alleleFreq
applyKinshipOverrides	applyKinshipOverrides
appServer	appServer
appUI	appUI
assignAlleles	assignAlleles
calcA	calcA
calcAge	calcAge
calcFE	calcFE
calcFEFG	calcFEFG
calcFG	calcFG
calcFGSE	calcFGSE
calcGeneDiversity	calcGeneDiversity
calcGU	calcGU
calcGUSE	calcGUSE
calcNeSexRatio	calcNeSexRatio
calcNeVariance	calcNeVariance
calcRetention	calcRetention
calculateSexRatio	calculateSexRatio
checkChangedColsLst	checkChangedColsLst
checkErrorLst	checkErrorLst
checkGenotypeFile	checkGenotypeFile
checkKinshipOverrides	checkKinshipOverrides
checkParentAge	checkParentAge
checkRequiredCols	checkRequiredCols
chooseAlleles	chooseAlleles
chooseDate	chooseDate
convertAncestry	convertAncestry
convertDate	convertDate
convertFromCenter	convertFromCenter
convertRelationships	convertRelationships
convertSexCodes	convertSexCodes
convertStatusCodes	convertStatusCodes
correctParentSex	correctParentSex
countFirstOrder	countFirstOrder
countKinshipValues	countKinshipValues
countLoops	countLoops
createExampleFiles	createExampleFiles
createPedTree	createPedTree
createSimKinships	createSimKinships
create_wkbk	create_wkbk
cumulateSimKinships	cumulateSimKinships
dataframe2string	dataframe2string
exampleNprcgenekeeprConfig	exampleNprcgenekeeprConfig
examplePedigree	examplePedigree
fillGroupMembersWithSexRatio	fillGroupMembersWithSexRatio
filterKinMatrix	filterKinMatrix
filterPairs	filterPairs
filterReport	filterReport
filterThreshold	filterThreshold
finalRpt	finalRpt
findGeneration	findGeneration
findLoops	findLoops
findOffspring	findOffspring
findPedigreeNumber	findPedigreeNumber
fixColumnNames	fixColumnNames
focalAnimals	focalAnimals
geneDrop	geneDrop
getAncestors	getAncestors
getAnimalsWithHighKinship	getAnimalsWithHighKinship
getAutoIdFormat	getAutoIdFormat
getBoxWhiskerDescription	getBoxWhiskerDescription
getChangedColsTab	getChangedColsTab
getConfigFileName	getConfigFileName
getCurrentAge	getCurrentAge
getDatedFilename	getDatedFilename
getDateErrorsAndConvertDatesInPed	getDateErrorsAndConvertDatesInPed
getDemographics	getDemographics
getDescendantPedigree	getDescendantPedigree
getEmptyErrorLst	getEmptyErrorLst
getErrorTab	getErrorTab
getFileDirectRelatives	getFileDirectRelatives
getFocalAnimalPed	getFocalAnimalPed
getFocalAnimalPedFromFile	getFocalAnimalPedFromFile
getFounders	getFounders
getGeneticDiversityStats	getGeneticDiversityStats
getGenotypes	getGenotypes
getGVGenotype	getGVGenotype
getGVPopulation	getGVPopulation
getIdsWithOneParent	getIdsWithOneParent
getIncludeColumns	getIncludeColumns
getLkDirectAncestors	getLkDirectAncestors
getLkDirectRelatives	getLkDirectRelatives
getOffspring	getOffspring
getParents	getParents
getPedDirectRelatives	getPedDirectRelatives
getPedigree	getPedigree
getPedMaxAge	getPedMaxAge
getPossibleCols	getPossibleCols
getPotentialParents	getPotentialParents
getPotentialSires	getPotentialSires
getProbandPedigree	getProbandPedigree
getPyramidAgeDist	getPyramidAgeDist
getPyramidPlot	getPyramidPlot
getRequiredCols	getRequiredCols
getSiteInfo	getSiteInfo
getSpeciesGestation	getSpeciesGestation
getSpeciesMinBreedingAge	getSpeciesMinBreedingAge
getTokenList	getTokenList
getVersion	getVersion
get_and_or_list	get_and_or_list
get_elapsed_time_str	get_elapsed_time_str
groupAddAssign	groupAddAssign
gvaConvergence	gvaConvergence
hasBothParents	hasBothParents
hasGenotype	hasGenotype
headerDisplayNames	headerDisplayNames
isFounder	isFounder
is_valid_date_str	is_valid_date_str
kinMatrix2LongForm	kinMatrix2LongForm
kinship	kinship
kinshipMatricesToKValues	kinshipMatricesToKValues
kinshipMatrixToKValues	kinshipMatrixToKValues
lacy1989Ped	lacy1989Ped
lacy1989PedAlleles	lacy1989PedAlleles
loadSiteConfig	loadSiteConfig
loadSpeciesOverrides	loadSpeciesOverrides
logModuleEvent	logModuleEvent
makeCEPH	makeCEPH
makeExamplePedigreeFile	makeExamplePedigreeFile
makeFounderStatsTable	makeFounderStatsTable
makeGeneticDiversityHeatmap	makeGeneticDiversityHeatmap
makeGeneticSummaryTable	makeGeneticSummaryTable
makeGroupMembers	makeGroupMembers
makeGroupNum	makeGroupNum
makeGrpNum	makeGrpNum
makeRelationClassesTable	makeRelationClassesTable
makeSimPed	makeSimPed
mapIdsToObfuscated	mapIdsToObfuscated
meanKinship	meanKinship
modBreedingGroupsServer	modBreedingGroupsServer
modBreedingGroupsUI	modBreedingGroupsUI
modGeneticDiversityServer	modGeneticDiversityServer
modGeneticDiversityUI	modGeneticDiversityUI
modGeneticValueServer	modGeneticValueServer
modGeneticValueUI	modGeneticValueUI
modGvAndBgDescServer	modGvAndBgDescServer
modGvAndBgDescUI	modGvAndBgDescUI
modInputServer	modInputServer
modInputUI	modInputUI
modORIPReportingServer	modORIPReportingServer
modORIPReportingUI	modORIPReportingUI
modPedigreeServer	modPedigreeServer
modPedigreeUI	modPedigreeUI
modPotentialParentsServer	modPotentialParentsServer
modPotentialParentsUI	modPotentialParentsUI
modPyramidServer	modPyramidServer
modPyramidUI	modPyramidUI
modSummaryStatsServer	modSummaryStatsServer
modSummaryStatsUI	modSummaryStatsUI
nprcgenekeepr	nprcgenekeepr-package
obfuscateDate	obfuscateDate
obfuscateId	obfuscateId
obfuscatePed	obfuscatePed
offspringCounts	offspringCounts
ped1Alleles	ped1Alleles
pedDuplicateIds	pedDuplicateIds
pedFemaleSireMaleDam	pedFemaleSireMaleDam
pedGood	pedGood
pedInvalidDates	pedInvalidDates
pedMissingBirth	pedMissingBirth
pedOne	pedOne
pedSameMaleIsSireAndDam	pedSameMaleIsSireAndDam
pedSix	pedSix
pedWithGenotype	pedWithGenotype
pedWithGenotypeReport	pedWithGenotypeReport
print.summary.nprcgenekeeprErr	print
print.summary.nprcgenekeeprGV	print
processQcStudbookResult	processQcStudbookResult
qcBreeders	qcBreeders
qcPed	qcPed
qcPedGvReport	qcPedGvReport
qcStudbook	qcStudbook
rankSubjects	rankSubjects
readKinshipOverrides	readKinshipOverrides
removeAutoGenIds	removeAutoGenIds
removeDuplicates	removeDuplicates
removeEarlyDates	removeEarlyDates
removePotentialSires	removePotentialSires
removeUninformativeFounders	removeUninformativeFounders
removeUnknownAnimals	removeUnknownAnimals
reportGV	reportGV
rhesusGenotypes	rhesusGenotypes
rhesusPedigree	rhesusPedigree
runGeneKeepR	runGeneKeepR
runModularApp	runModularApp
runQcStudbook	runQcStudbook
safeExecute	safeExecute
saveDataframesAsFiles	saveDataframesAsFiles
savePlotToFile	savePlotToFile
setAutoIdFormat	setAutoIdFormat
setExit	setExit
setLabKeyDefaults	setLabKeyDefaults
setPopulation	setPopulation
set_seed	set_seed
shouldShowChangedColsTab	shouldShowChangedColsTab
shouldShowOripTab	shouldShowOripTab
smallPed	smallPed
smallPedTree	smallPedTree
speciesGestation	speciesGestation
summarizeKinshipValues	summarizeKinshipValues
summary.nprcgenekeeprErr	summary
summary.nprcgenekeeprGV	summary
toCharacter	toCharacter
trimPedigree	trimPedigree
withinIntegerRange	withinIntegerRange
