Package: spacemodR
Title: Spatial Environmental Risk Assessment Through Food Webs
Version: 0.3.5
Authors@R: 
    c(person("Virgile", "Baudrot", email = "virgile.baudrot@qonfluens.com", role = c("aut", "cre", "cph")),
      person("Léa", "Bariod", email = "lea.bariod@univ-fcomte.fr", role = "ctb"),
      person("Clémentine", "Fritsch", email = "clementine.fritsch@univ-fcomte.fr", role = c("ctb", "cph")),
      person("Renaud", "Scheifler", email = "renaud.scheifler@univ-fcomte.fr", role = "ctb")
    )
Description: A workflow for spatially explicit environmental risk assessment
  of contaminated sites: habitat, food web, dispersal, exposure and risk.
  Starting from a raster of soil contamination, the package builds habitat
  layers for a set of species, organises them in a directed acyclic graph
  representing a food web, and propagates the flow of elements (e.g., food,
  energy, contaminants) along its links. It also provides soil interpolation
  by kriging, dispersal by kernel convolution or by circuit theory (through
  the optional 'Julia' package 'Omniscape'), land cover retrieval for France
  ('OCS-GE') and Europe ('EUNIS'), and Bayesian calibration of transfer
  models with 'Stan'.
License: MIT + file LICENSE
URL: https://github.com/Qonfluens/spacemodR,
        https://qonfluens.github.io/spacemodR/
BugReports: https://github.com/Qonfluens/spacemodR/issues
Imports: dplyr, ggplot2, httr, methods, patchwork, Rcpp (>= 0.12.0),
        rlang, rstan (>= 2.18.1), rstantools (>= 2.4.0), sf, terra,
        tools
Encoding: UTF-8
LazyData: true
Suggests: archive, knitr, rmarkdown, testthat (>= 3.0.0), JuliaCall,
        tidyterra, scales, purrr, quarto, tidyr, leaflet, gstat
Config/testthat/edition: 3
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Biarch: true
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make, Julia (optional, for dispersal with
        'Omniscape')
Config/roxygen2/version: 8.0.0
NeedsCompilation: yes
Packaged: 2026-10-12 15:25:46 UTC; virgile
Author: Virgile Baudrot [aut, cre, cph],
  Léa Bariod [ctb],
  Clémentine Fritsch [ctb, cph],
  Renaud Scheifler [ctb]
Maintainer: Virgile Baudrot <virgile.baudrot@qonfluens.com>
Repository: CRAN
Date/Publication: 2026-10-12 19:10:08 UTC
Built: R 4.6.1; x86_64-apple-darwin20; 2026-10-12 21:28:02 UTC; unix
Archs: spacemodR.so.dSYM
