Package: twoPhaseSens
Title: Sensitivity Analysis for Covariates Observed in Two-Phase
        Samples
Version: 0.1.0
Authors@R: c(person("Rophence", "Ojiambo", email = "rophence.ojiambo@nyu.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6798-9066")), person("Jemar", "Bather", email = "jemar.bather@nyu.edu", role = "aut", comment = c(ORCID = "0000-0002-0285-3678")))
Description: Provides a structured method-comparison sensitivity-analysis
    workflow for linear regression when important continuous adjustment
    covariates are observed only in a Phase-2 subsample. Implements naive
    analysis, complete-case analysis, fully conditional specification multiple
    imputation, joint-model multiple imputation, inverse probability
    weighting, and augmented inverse probability weighting, with standardized
    tables, diagnostics, and publication-style forest plots. Methodological
    background is provided by Little and Rubin (2019)
    <doi:10.1002/9781119482260> for general missing-data methods, White and
    Carlin (2010) <doi:10.1002/sim.3944> for complete-case analysis with
    missing covariates, White, Royston and Wood (2011)
    <doi:10.1002/sim.4067> and van Buuren and Groothuis-Oudshoorn (2011)
    <doi:10.18637/jss.v045.i03> for chained-equations multiple imputation,
    Quartagno, Grund and Carpenter (2019) <doi:10.32614/RJ-2019-028> for
    joint-model multiple imputation, Robins, Rotnitzky and Zhao (1994)
    <doi:10.1080/01621459.1994.10476818> for inverse-probability weighting
    with missing regressors, and Bang and Robins (2005)
    <doi:10.1111/j.1541-0420.2005.00377.x> for doubly robust estimation.
License: MIT + file LICENSE
URL: https://rophenceojiambo.github.io/twoPhaseSens/,
        https://github.com/rophenceojiambo/twoPhaseSens
BugReports: https://github.com/rophenceojiambo/twoPhaseSens/issues
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: ggplot2, gtsummary (>= 2.0.0), jomo, mice, rlang, tidyselect
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-10-14 14:26:41 UTC; runner
Author: Rophence Ojiambo [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6798-9066>),
  Jemar Bather [aut] (ORCID: <https://orcid.org/0000-0002-0285-3678>)
Maintainer: Rophence Ojiambo <rophence.ojiambo@nyu.edu>
Repository: CRAN
Date/Publication: 2026-10-22 16:50:02 UTC
Built: R 4.6.1; ; 2026-10-22 19:58:20 UTC; unix
