A Toolkit for Archetypal Analysis Methods
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Documentation for package ‘yaap’ version 1.0.0
Help Pages
| aa_init | Archetypal Analysis Initialization Functions |
| AIC.archetypes | AIC for archetypes objects |
| anames | Archetype names |
| anames.archetypes | Archetype names |
| anames<- | Archetype names |
| anames<-.archetypes | Archetype names |
| archetypes_directional | Directional Archetypal Analysis |
| archetypes_kernel_pgd | Kernel Archetypal Analysis using Projected Gradient Descent |
| archetypes_nnls | Archetypal Analysis using Non-Negative Least Squares |
| archetypes_paa | Probabilistic Archetypal Analysis using Projected Gradient Descent |
| archetypes_path | Fit an Archetypes Path Across K |
| archetypes_path.default | Fit an Archetypes Path Across K |
| archetypes_path.formula | Fit an Archetypes Path Across K |
| archetypes_pgd | Archetypes Analysis using Projected Gradient Descent |
| augment.archetypes | Augment data with composition weights from an archetypes model |
| augment.kernel_archetypes | Augment data with composition weights from an archetypes model |
| coefficients.archetypes | Coefficients for archetypes objects |
| compositions | Access archetype coordinates and compositions |
| compositions.archetypes | Access archetype coordinates and compositions |
| consistency | Consistency Between Archetypal Analysis Fits |
| consistency.archetypes | Consistency Between Archetypal Analysis Fits |
| coordinates | Access archetype coordinates and compositions |
| coordinates.archetypes | Access archetype coordinates and compositions |
| fitted.archetypes | Fitted values for archetypes objects |
| fit_simplex | Fit Data to Convex Hull defined by Archetypes |
| glance.archetypes | Glance at an archetypes model |
| glance.kernel_archetypes | Glance at an archetypes model |
| onehot | One-hot encode a vector |
| onehot.character | One-hot encode a vector |
| onehot.default | One-hot encode a vector |
| onehot.factor | One-hot encode a vector |
| plot.archetypes | Plot method for archetypes objects |
| plot_archetypes_compositions | Composition Plot For Archetypes |
| plot_archetypes_coordinates | Coordinate Plot For Archetypes |
| plot_archetypes_loss | Loss Plot For Archetypes |
| plot_archetypes_profiles | Profile Plot For Archetypes |
| predict.archetypes | Predict compositions or reconstructions for new data from an archetypes model |
| predict.directional_archetypes | Predict compositions or reconstructions for directional archetypes |
| predict.kernel_archetypes | Predict method for kernel archetypes |
| proj_l1 | Project rows of matrix onto the probability simplex |
| proj_simplex | Project rows of matrix onto the probability simplex |
| residuals.archetypes | Residuals for archetypes objects |
| residuals.kernel_archetypes | Residuals for kernel archetypes objects |
| run_aa | Run Archetypal Analysis |
| run_aa.default | Run Archetypal Analysis |
| run_aa.fd | Run Archetypal Analysis |
| run_aa.formula | Run Archetypal Analysis |
| screeplot.archetypes_path | Scree Plot for an Archetypes Path |
| simplex_projection | Project rows of matrix onto the probability simplex |
| step_archetypes | Archetypal Analysis Preprocessing Step for recipes |
| tidy.archetypes | Tidy an archetypes model |
| tidy.kernel_archetypes | Tidy an archetypes model |