Interface to the Biological Magnetic Resonance Data Bank ('BMRB')

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Documentation for package ‘RBMRB’ version 3.0.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

bmrb_citation	Get the citation for a BMRB entry
bmrb_debug_entry	Diagnose BMRB entry fetch problems
bmrb_fetch_entry	Fetch raw metadata for a BMRB entry
bmrb_from_pdb	Get BMRB IDs associated with a PDB entry
bmrb_list_entries	List all BMRB entry IDs
bmrb_pdb_ids	Get PDB IDs associated with a BMRB entry
bmrb_search	Search BMRB using the instant-search endpoint
bmrb_status	Get BMRB API server status
bmrb_test	Run a connectivity self-test
bmrb_upload_entry	Upload an NMR-STAR file to BMRB for temporary access
c13hsqc	Simulate a ^1H{-}^{13}C HSQC spectrum
conditional_cs_hist	Plot a conditional chemical shift histogram
create_2d_peaklist	Build a generic 2D peak list for any two atoms
create_c13hsqc_peaklist	Build a 1H-13C HSQC peak list
create_n15hsqc_peaklist	Build a 1H-15N HSQC peak list
create_tocsy_peaklist	Build a 1H-1H TOCSY peak list
cs_from_bmrb	Extract chemical shifts from BMRB database entries
cs_from_file	Extract chemical shifts from local NMR-STAR files
cs_hist	Plot a chemical shift distribution histogram
cs_hist2d	Plot a 2D chemical shift correlation map
cs_peek	Peek at a nested CS structure
cs_stats	Compute summary statistics for a set of chemical shifts
cs_summary	Summarise a nested chemical shift list
cs_table	Get a flat data.frame of chemical shifts for one or more BMRB entries
cs_to_df	Convert a nested CS list to a tidy data.frame
export_peak_list	Export a peak list to CSV or Sparky format
filter_cs_outliers	Remove outliers from a numeric vector
generic_2d	Plot a generic 2D NMR correlation spectrum
get_2d_cs_data	Fetch paired 2D chemical shift data for two atoms in the same residue
get_cs_data	Fetch chemical shift data from the BMRB database
get_cs_from_bmrb_db	Fetch raw BMRB chemical shift data (no outlier filtering)
n15hsqc	Simulate a ^{1}H{-}^{15}N HSQC spectrum
RBMRB_version	Get the installed RBMRB version
standard_amino_acids	List the 20 standard amino acid codes
standard_nucleic_acids	List standard nucleic acid residue codes
tocsy	Simulate a ^1H{-}^1H TOCSY spectrum