A Tidyverse-Native Client for the 'BrAPI' v2 (Breeding API)
Specification
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Documentation for package ‘brapiR2’ version 0.2.0
Help Pages
| brapi_allele_matrix | Get Allele Matrix |
| brapi_cache_clear | Clear the Response Cache |
| brapi_cache_enable | Enable Response Caching |
| brapi_calls | List Genotype Calls |
| brapi_call_sets | List Call Sets (Samples with Genotype Data) |
| brapi_connection | Create a BrAPI Connection Object |
| brapi_crosses | List Crosses |
| brapi_crossing_projects | List Crossing Projects |
| brapi_endpoints | List Available Endpoints |
| brapi_events | List Events |
| brapi_fetch_parallel | Parallel Batch Fetching |
| brapi_germplasm | List Germplasm |
| brapi_germplasm_attributes | List Germplasm Attributes |
| brapi_germplasm_detail | Get a Single Germplasm by ID |
| brapi_germplasm_pedigree | Get Germplasm Pedigree |
| brapi_germplasm_progeny | Get Germplasm Progeny |
| brapi_get | Call Any BrAPI GET Endpoint |
| brapi_get_dosage_matrix | Get Dosage Matrix for Genomic Selection |
| brapi_get_marker_map | Get Marker Map |
| brapi_images | List Images |
| brapi_list | Get a Single List by ID, With Its Contents |
| brapi_lists | List Generic Lists |
| brapi_location | Get a Single Location by ID |
| brapi_locations | List Locations |
| brapi_login | Login to a BrAPI Server with Username and Password |
| brapi_login_oauth2 | Login to a BrAPI Server with OAuth 2.0 |
| brapi_map | Get a Single Genome Map by ID |
| brapi_maps | List Genome Maps |
| brapi_map_linkage_groups | List the Linkage Groups of a Genome Map |
| brapi_marker_positions | List Marker Positions |
| brapi_methods | List Methods |
| brapi_observations | List Observations |
| brapi_observation_units | List Observation Units |
| brapi_observation_variables | List Observation Variables |
| brapi_ontologies | List Ontologies |
| brapi_ontology | Get a Single Ontology by ID |
| brapi_pedigree | List Pedigree Nodes |
| brapi_people | List People |
| brapi_ping | Ping a BrAPI Server |
| brapi_post_search | Call Any BrAPI Search Endpoint |
| brapi_program | Get a Single Program by ID |
| brapi_programs | List Breeding Programs |
| brapi_references | List References (Chromosomes/Contigs) |
| brapi_reference_sets | List Reference Sets (Genome Assemblies) |
| brapi_samples | List Samples |
| brapi_scales | List Scales |
| brapi_search_calls | Search Genotype Calls |
| brapi_search_germplasm | Search Germplasm |
| brapi_search_marker_positions | Search Marker Positions |
| brapi_search_observations | Search Observations |
| brapi_search_pedigree | Search Pedigree Nodes |
| brapi_search_variables | Search Observation Variables |
| brapi_search_variants | Search Variants |
| brapi_seasons | List Seasons |
| brapi_seed_lots | List Seed Lots |
| brapi_server_info | Get Server Info |
| brapi_set_token | Manually Set an Authentication Token |
| brapi_studies | List Studies |
| brapi_study | Get a Single Study by ID |
| brapi_study_data | Get Study Data in Wide Format |
| brapi_traits | List Traits |
| brapi_trial | Get a Single Trial by ID |
| brapi_trials | List Trials |
| brapi_variants | List Variants (Markers/SNPs) |
| brapi_variant_sets | List Variant Sets (Datasets) |
| print.brapi_con | Print a BrAPI Connection Object |