Fast Spatial Species Accumulation Curves


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Documentation for package ‘spacc’ version 0.8.3

Help Pages

ace ACE Richness Estimator
alphaDiversity Alpha Diversity (Per-Site)
analytical Analytical Accumulation Methods
as_sf Convert spacc_metrics to sf
autoplot.spacc Autoplot Methods for spacc Objects
betaDecay Beta Distance-Decay
bootstrap_richness Bootstrap Richness Estimator
c.spacc Combine spacc Objects
c.spacc_beta Combine spacc_beta Objects
c.spacc_coverage Combine spacc_coverage Objects
c.spacc_hill Combine spacc_hill Objects
chao1 Chao1 Richness Estimator
chao2 Chao2 Richness Estimator
coleman Coleman Expected Accumulation
collector Collector's Curve
compare Compare Two Accumulation Curves
compareModels Compare Multiple SAR Models
completenessProfile Sample Completeness Profile
dar Diversity-Area Relationship (DAR)
distanceDecay Distance-Decay Analysis
distances Compute Distance Matrix
diversityPartition Alpha-Beta-Gamma Diversity Partitioning
diversityProfile Diversity Profile
diversityProfileFunc Functional Diversity Profile
diversityProfilePhylo Phylogenetic Diversity Profile
evenness Evenness Profiles
extrapolate Extrapolate Total Species Richness
extrapolateCoverage Extrapolate Richness Beyond Observed Coverage
gammaDiversity Gamma Diversity (Regional)
iChao1 Improved Chao1 (iChao1) Richness Estimator
iChao2 Improved Chao2 (iChao2) Richness Estimator
interpolateCoverage Interpolate Richness at Target Coverage Levels
jackknife Jackknife Richness Estimator
mao_tau Exact (Mao Tau) Expected Accumulation
plot.spacc Plot Spatial SAC
plot.spacc_metrics Plot spacc_metrics
predict.spacc Predict from Empirical Accumulation Curve
rarefy Individual-Based Rarefaction
ses Standardized Effect Size (SES) via Null Models
sesars Sampling Effort Species-Area Relationship (SESARS)
sfar Species-Fragmented Area Relationship (SFAR)
spacc Spatial Species Accumulation Curves
spaccBeta Spatial Beta Diversity Accumulation
spaccBetaFunc Functional Beta Diversity Accumulation
spaccBetaPhylo Phylogenetic Beta Diversity Accumulation
spaccCoverage Coverage-Based Spatial Rarefaction
spaccDiversity Spatial Accumulation of a Custom Diversity Metric
spaccEndemism Spatial Endemism Accumulation
spaccFunc Spatial Functional Diversity Accumulation
spaccHill Spatial Accumulation with Hill Numbers
spaccHillBeta Spatial Hill Number Beta Diversity
spaccHillCoverage Spatial Hill Numbers at Standardized Coverage
spaccMetrics Per-Site Accumulation Metrics
spaccPhylo Spatial Phylogenetic Diversity Accumulation
spatialEigenvectors Spatial Eigenvectors (PCNM/dbMEM)
spatialPartition Spatial Variance Partitioning with MEMs
spatialRarefaction Spatially-Constrained Rarefaction
subsample Spatial Subsampling
wavefront Wavefront Expansion Accumulation
zetaDiversity Zeta Diversity