Estimate Genetic Sex from Expression Counts
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Documentation for package ‘SexSeek’ version 0.1.0
Help Pages
| CompareSex | Compare calls with recorded sex |
| DetectSpecies | Detect species from gene identifiers or symbols |
| EstimateSex | Estimate genetic sex from expression counts |
| EstimateSex.character | Estimate genetic sex from expression counts |
| EstimateSex.default | Estimate genetic sex from expression counts |
| EstimateSex.list | Estimate genetic sex from expression counts |
| EstimateSex.Seurat | Estimate genetic sex from expression counts |
| EstimateSex.SingleCellExperiment | Estimate genetic sex from expression counts |
| EstimateSex.SummarizedExperiment | Estimate genetic sex from expression counts |
| ExampleData | Example datasets with recorded sex |
| GametologPairs | X/Y gametolog pairs |
| MarkerCellFraction | Fraction of cells carrying any sex-specific marker count |
| MarkerCellFraction.default | Fraction of cells carrying any sex-specific marker count |
| MarkerCellFraction.list | Fraction of cells carrying any sex-specific marker count |
| PanelFor | The panel rows for one species |
| PlotCellFraction | Plot the fraction of cells carrying a marker count |
| PlotSexEvidence | Plot the evidence behind each call |
| Read10xDir | Read a 10x MatrixMarket triplet from a directory |
| Read10xH5 | Read a 10x HDF5 counts file |
| ResolveSpecies | Resolve a user-supplied species name to a scientific name |
| SexChromosomeGenes | Retrieve sex-chromosome annotations with genevintage |
| SexPanels | Sex-linked gene panels for every supported species |
| SexSpecies | Supported species and their sex-determination systems |
| SummariseComparison | Count agreements with recorded sex |