Gene Cluster Visualizations
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Documentation for package ‘geneviewer’ version 0.2.0
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| BRCA1_splice_variants | BRCA1 Splice Variants |
| coronavirus_genomes | Genes of eleven coronaviruses from the four genera |
| erythromycin_BlastP | Erythromycin protein alignment results |
| erythromycin_cluster | Erythromycin Gene Cluster Data |
| gbk_features_to_df | Convert GenBank Features to Data Frame |
| GC_align | Align gene clusters |
| GC_annotation | Add Annotations to a GC_chart |
| GC_chart | Create a GC Chart Visualization |
| GC_chartOutput | Shiny bindings for geneviewer |
| GC_cluster | Modify Cluster Settings |
| GC_clusterFooter | Add a Footer to Each Cluster in a GC Chart |
| GC_clusterLabel | Set or Update Cluster Labels for a GC Chart |
| GC_clusterTitle | Update cluster Title of a GC Chart Cluster |
| GC_color | Update Color Scheme in Gene Chart |
| GC_coordinates | Modify Coordinates in a GC Chart |
| GC_element_style | Style an Individual Element |
| GC_events | Report Chart Interactions and Completed Updates |
| GC_genes | Modify Gene Characteristics within a Chart |
| GC_grid | Update Grid Display of a GC Chart Cluster |
| GC_labels | Add Labels to Each Cluster in a GC Chart |
| GC_legend | Set Legend for a Gene Chart |
| GC_links | Add Links to GC Chart |
| GC_normalize | Normalize Gene Clusters in a Genomic Chart |
| GC_pattern | Fill Genes with Patterns |
| GC_scale | Update Scale of a GC Chart Cluster |
| GC_scaleBar | Update Scale Bar of a GC Chart Cluster |
| GC_sequence | Update Sequence Display of a GC Chart Cluster |
| GC_theme | Set the Theme of a GC Chart |
| GC_title | Add Title to a GC_chart |
| GC_toolbar | Set the Toolbar of a GC Chart |
| GC_tooltip | Set Tooltip for a Gene Chart |
| GC_trackMouse | Track Mouse Movement in a GC_chart |
| GC_transcript | Modify Transcript Characteristics within a Chart |
| GC_zoom | Add a Zoom Slider to a GC Chart |
| GC_zoom_to | Set the Zoom of a GC Chart in Shiny |
| genbank_to_fasta | Convert GenBank to FASTA Format |
| geneviewer-shiny | Shiny bindings for geneviewer |
| geneviewer_palette | Colours of a geneviewer Palette |
| geneviewer_theme | Settings of a Built-in Theme |
| get_introns | Calculate Intron Positions Based on Exons |
| hs_dystrophin_transcripts | Human Dystrophin Transcripts Data |
| human_hox_genes | Human HOX Gene Cluster Data |
| mitochondrial_gene_order | Human and Locust Mitochondrial Gene Order |
| mummer_alignment | Perform Sequence Alignment Using MUMmer |
| ophA_clusters | ophA Gene Cluster from Omphalotus olearius |
| pQEB1_alignment | Nucleotide alignment of the pQEB1 plasmids |
| pQEB1_plasmids | Genes of the blaKPC-2 plasmid pQEB1 and four of its variants |
| protein_blast | Find Homologous Proteins Between Clusters by Pairwise Alignment |
| read_bed | Read BED Files |
| read_fasta | Read Protein Sequences from FASTA Files |
| read_gbk | Read Data from GenBank Files |
| read_gff | Read GFF Files |
| renderGC_chart | Shiny bindings for geneviewer |
| tn7_crispr_elements | Genes of Tn7 and of Tn7-like transposons carrying a CRISPR-Cas system |