Package: genevintage
Title: Detect Annotation Releases and Repair Gene Names
Version: 0.1.3
Authors@R: 
    person("Saket", "Choudhary", email = "saketc@iitb.ac.in", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-5202-7633"))
Description: Detects the species and the 'Ensembl' <https://www.ensembl.org>
    or 'GENCODE' <https://www.gencodegenes.org> annotation release associated
    with a set of gene or transcript identifiers by scoring them against
    a bundled fingerprint of each release. Identifiers are then converted to
    gene names using the matching release. Gene symbols that spreadsheet software 
    turned into dates or numbers ('SEPT9' to '9-Sep') are restored to the 
    spelling of the chosen release. Also retrieves genes by class (mitochondrial,
    sex-linked, protein-coding, ribosomal, transfer RNA, long non-coding
    RNA), exon-union gene lengths, 'Entrez' cross-references, and orthologs
    in another species from 'Ensembl Compara'.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1.0)
Imports: stats, tools, utils
Suggests: curl, Matrix, knitr, methods, rmarkdown, spelling, testthat
        (>= 3.0.0), withr
Config/testthat/edition: 3
URL: https://genevintage.saketlab.org/R/,
        https://github.com/saketlab/genevintage
BugReports: https://github.com/saketlab/genevintage/issues
Config/roxygen2/version: 8.1.0
VignetteBuilder: knitr
Language: en-US
NeedsCompilation: no
Packaged: 2026-10-08 21:57:31 UTC; saket
Author: Saket Choudhary [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5202-7633>)
Maintainer: Saket Choudhary <saketc@iitb.ac.in>
Repository: CRAN
Date/Publication: 2026-10-20 18:20:16 UTC
Built: R 4.5.3; ; 2026-10-20 23:51:52 UTC; windows
