Data-Driven Search Strategy Development and Evidence Synthesis Reporting

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Documentation for package ‘CiteSource’ version 0.2.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

CiteSource-package	CiteSource: A package to compare sources of citation records
calculate_detailed_records	Calculate Detailed Record Counts
calculate_initial_records	Calculate Initial Records Unique Citations
calculate_phase_count	Calculate phase counts, precision, and recall
calculate_phase_records	Calculate Phase Counts with Precision and Recall
calculate_record_counts	Calculate record counts function Calculate and combine counts of distinct records, imported records, and unique records for each database
citation_summary_table	Contribution summary table
CiteSource	CiteSource: A package to compare sources of citation records
compare_sources	Compare duplicate citations across sources, labels, and strings
count_unique	Count number of unique and non-unique citations from different sources, labels, and strings
create_detailed_record_table	Create a Detailed Record Table
create_initial_record_table	Initial Record Table
create_precision_sensitivity_table	Count and Precision/Sensitivity Table
dedup_citations	Deduplicate citations
dedup_citations_add_manual	Add manually identified duplicate pairs to a deduplicated dataset
dedup_citations_add_sources	Add new citations to a previously deduplicated set and re-deduplicate
dedup_log	Build a provenance log of all merged duplicate pairs
detect_	Detect file formatting information
detect_delimiter	Detect file formatting information
detect_lookup	Detect file formatting information
detect_parser	Detect file formatting information
detect_year	Detect file formatting information
export_bib	Export deduplicated citations to .bib file
export_csv	Export deduplicated citations with source data as CSV file
export_dedup_candidates	Export manual-review candidate pairs to a CSV file
export_ris	Export data frame to RIS file
merge_columns	Bind two or more data frames with different columns
parse_	Parse bibliographic text in a variety of formats
parse_bibtex	Parse bibliographic text in a variety of formats
parse_csv	Parse bibliographic text in a variety of formats
parse_pubmed	Parse bibliographic text in a variety of formats
parse_ris	Parse bibliographic text in a variety of formats
parse_tsv	Parse bibliographic text in a variety of formats
plot_contributions	Create a bar chart that compares source contributions over stages
plot_source_overlap_heatmap	Create a heatmap matrix showing the overlap between sources
plot_source_overlap_upset	Create an UpSetR upset plot showing the overlap between sources
read_citations	Import citations from file
read_ref	Import bibliographic search results
record_counts	Record counts function Calculate and combine counts of distinct records and imported records for each database
record_level_table	Record-level table
reimport_csv	Reimport a CSV-file exported from CiteSource
reimport_dedup_candidates	Reimport manual-review candidate pairs exported from CiteSource
reimport_ris	Reimport a RIS-file exported from CiteSource
runShiny	A wrapper function to run Shiny Apps from 'CiteSource'.
run_shiny	A wrapper function to run Shiny Apps from 'CiteSource'.
synthesisr_read_refs	Import bibliographic search results
write_bib	Export data to a bibliographic format
write_refs	Export data to a bibliographic format
write_ris	Export data to a bibliographic format