Last updated on 2026-01-09 23:51:36 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 28.69 | 329.04 | 357.73 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 17.30 | 206.61 | 223.91 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 57.00 | 444.37 | 501.37 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 50.00 | 471.40 | 521.40 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 28.00 | 440.00 | 468.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.4 | 29.11 | 256.85 | 285.96 | ERROR | |
| r-release-linux-x86_64 | 0.2.4 | 24.62 | 259.32 | 283.94 | ERROR | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 17.00 | 423.00 | 440.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 39.00 | 413.00 | 452.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 20.00 | 377.00 | 397.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 50.00 | 536.00 | 586.00 | ERROR |
Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [127s/137s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-08 17:36:11.455299 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-08 17:36:16.060026 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-08 17:36:19.990953 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-08 17:36:26.559479 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:30.179168 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:34.024584 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3014181 on localhost:11724 at 17:36:34.384
2026-01-08 17:36:38.540044 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.512 s.
2026-01-08 17:36:38.629733 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:42.840437 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:46.720286 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-08 17:36:50.986718 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:36:55.203839 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:36:57.932947 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:01.071653 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:01.118224 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:04.914877 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:04.940563 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:04.980406 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.003932 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.029508 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.072436 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.111339 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:05.148572 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:08.635914 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
starting worker pid=3022800 on localhost:11724 at 17:37:09.014
starting worker pid=3022801 on localhost:11724 at 17:37:09.049
2026-01-08 17:37:18.597531 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:22.127061 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:22.143027 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:22.151588 gimli2 3006428 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3025943 on localhost:11724 at 17:37:22.546
2026-01-08 17:37:27.813991 gimli2 3006428 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.65700000000001 s.} ...
2026-01-08 17:37:27.816913 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3026783 on localhost:11724 at 17:37:28.197
2026-01-08 17:37:32.716487 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.90000000000001 s.
2026-01-08 17:37:32.738425 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3027750 on localhost:11724 at 17:37:33.301
2026-01-08 17:37:38.701316 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.96300000000001 s.
2026-01-08 17:37:38.703661 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 16.56 s.
2026-01-08 17:37:38.717378 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:38.729319 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:38.767579 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:38.779333 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:38.934711 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:38.945199 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:38.981419 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:41.546864 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:41.559959 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:41.597939 gimli2 3006428 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-07 r89288), detected cores: 32
2026-01-08 17:37:41.615811 gimli2 3006428 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 17:37:41.695397 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-08 17:37:45.531497 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:37:49.504146 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3033032 on localhost:11724 at 17:37:49.910
2026-01-08 17:37:54.239774 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.735 s.
2026-01-08 17:37:54.248972 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3034051 on localhost:11724 at 17:37:54.717
2026-01-08 17:38:00.281312 gimli2 3006428 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.039 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-08 17:38:00.424048 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:38:03.100469 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:38:06.898516 gimli2 3006428 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3038195 on localhost:11724 at 17:38:07.226
2026-01-08 17:38:11.854297 gimli2 3006428 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.95599999999999 s.
2026-01-08 17:38:11.916521 gimli2 3006428 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 17:38:15.809913 gimli2 3006428 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3040419 on localhost:11724 at 17:38:16.159
2026-01-08 17:38:22.537616 gimli2 3006428 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.72499999999999 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [71s/100s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-09 13:21:58.633809 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-09 13:22:02.677136 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-09 13:22:06.516339 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-09 13:22:13.227728 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:16.686011 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:19.684185 gimli1 1992919 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2009235 on localhost:11876 at 13:22:20.179
2026-01-09 13:22:22.596642 gimli1 1992919 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.913 s.
2026-01-09 13:22:22.622535 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:26.146939 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:29.441829 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-09 13:22:32.610205 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:35.511554 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:37.436759 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:39.63869 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:39.671938 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:42.817019 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:42.849796 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:42.878499 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:42.909822 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:42.933355 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:42.970699 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:43.002213 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:43.026428 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:46.53713 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
starting worker pid=2033937 on localhost:11876 at 13:22:46.894
starting worker pid=2033936 on localhost:11876 at 13:22:46.905
2026-01-09 13:22:52.341269 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:22:55.29241 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:22:55.308621 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-09 13:22:55.311779 gimli1 1992919 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2042095 on localhost:11876 at 13:22:55.571
2026-01-09 13:22:58.571279 gimli1 1992919 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.255 s.} ...
2026-01-09 13:22:58.573112 gimli1 1992919 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2045276 on localhost:11876 at 13:22:58.951
2026-01-09 13:23:01.307357 gimli1 1992919 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.734 s.
2026-01-09 13:23:01.313661 gimli1 1992919 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2047572 on localhost:11876 at 13:23:01.685
2026-01-09 13:23:04.95719 gimli1 1992919 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.643 s.
2026-01-09 13:23:04.958771 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.65 s.
2026-01-09 13:23:04.967399 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:23:04.986637 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-09 13:23:05.00441 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:23:05.02255 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-09 13:23:05.064654 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:23:05.086404 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-09 13:23:05.099283 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:23:07.330179 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:23:07.345287 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-09 13:23:07.35404 gimli1 1992919 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2026-01-08 r89292), detected cores: 64
2026-01-09 13:23:07.36075 gimli1 1992919 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-09 13:23:07.380022 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-09 13:23:10.89304 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:23:14.055415 gimli1 1992919 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2059558 on localhost:11876 at 13:23:14.387
2026-01-09 13:23:16.756986 gimli1 1992919 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.702 s.
2026-01-09 13:23:16.758866 gimli1 1992919 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2061080 on localhost:11876 at 13:23:17.014
2026-01-09 13:23:19.73319 gimli1 1992919 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 2.974 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-09 13:23:19.800642 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:23:22.104346 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:23:25.157755 gimli1 1992919 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2066894 on localhost:11876 at 13:23:25.526
2026-01-09 13:23:27.799338 gimli1 1992919 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.64100000000001 s.
2026-01-09 13:23:27.822166 gimli1 1992919 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-09 13:23:31.103778 gimli1 1992919 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2070662 on localhost:11876 at 13:23:31.406
2026-01-09 13:23:35.34944 gimli1 1992919 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.244 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [146s/402s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-08 22:39:30.998349 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-08 22:39:45.656449 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-08 22:40:01.852319 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-08 22:40:21.234273 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:40:28.984776 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:40:38.156516 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2672205 on localhost:11538 at 22:40:38.803
2026-01-08 22:40:49.472605 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 11.316 s.
2026-01-08 22:40:49.644656 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:40:59.094515 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:41:10.359439 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-08 22:41:20.106376 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:41:32.451833 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:41:44.879764 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:41:51.299549 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:41:51.439171 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:42:01.591402 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:01.677539 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:01.772459 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:01.943199 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.028103 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.113674 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.344102 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:02.619447 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:42:11.027693 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
starting worker pid=2681134 on localhost:11538 at 22:42:12.114
starting worker pid=2681139 on localhost:11538 at 22:42:13.137
2026-01-08 22:42:47.407496 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:42:58.24701 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:42:58.273742 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:42:58.291538 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2685305 on localhost:11538 at 22:42:59.281
2026-01-08 22:43:11.302314 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 13.003 s.} ...
2026-01-08 22:43:11.307634 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2686266 on localhost:11538 at 22:43:12.051
2026-01-08 22:43:26.851436 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 15.544 s.
2026-01-08 22:43:26.859962 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2687587 on localhost:11538 at 22:43:27.603
2026-01-08 22:43:46.131346 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.271 s.
2026-01-08 22:43:46.140441 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 47.867 s.
2026-01-08 22:43:46.246974 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:46.269138 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:46.323866 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:46.350092 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:46.460846 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:46.529205 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:46.600512 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:43:54.081097 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:54.654818 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:54.682213 gannet.stats.ox.ac.uk 2663146 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-08 r89292), detected cores: 24
2026-01-08 22:43:54.759469 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-08 22:43:54.90262 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-08 22:44:07.275781 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:44:18.096669 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2692575 on localhost:11538 at 22:44:19.190
2026-01-08 22:44:33.57265 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 15.476 s.
2026-01-08 22:44:33.584849 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=2693949 on localhost:11538 at 22:44:34.551
2026-01-08 22:44:53.517762 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.933 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-08 22:44:54.772832 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:45:07.943978 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:45:16.283155 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=2699042 on localhost:11538 at 22:45:16.973
2026-01-08 22:45:27.913061 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 11.63 s.
2026-01-08 22:45:27.98944 gannet.stats.ox.ac.uk 2663146 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-08 22:45:39.165211 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=2702052 on localhost:11538 at 22:45:40.347
2026-01-08 22:45:55.256909 gannet.stats.ox.ac.uk 2663146 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 16.088 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [142s/346s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 08:34:06.73367 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 08:34:20.269132 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 08:34:30.62967 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 08:34:47.635888 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:34:57.988268 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:08.016407 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1195763 on localhost:11437 at 08:35:08.561
2026-01-03 08:35:17.350611 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 9.33399999999999 s.
2026-01-03 08:35:17.547488 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:26.491516 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:35.733676 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 08:35:46.098705 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:35:55.270946 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:02.375742 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:08.468615 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:08.515654 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:18.895044 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:18.951343 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.008601 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.119817 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.189037 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.246526 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.309588 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:36:19.387205 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:36:30.648525 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
starting worker pid=1204902 on localhost:11437 at 08:36:31.437
starting worker pid=1204903 on localhost:11437 at 08:36:31.474
2026-01-03 08:36:56.776655 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:09.87984 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:09.964198 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:10.011706 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1214291 on localhost:11437 at 08:37:10.686
2026-01-03 08:37:22.126932 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 12.103 s.} ...
2026-01-03 08:37:22.135026 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1215630 on localhost:11437 at 08:37:22.953
2026-01-03 08:37:34.873498 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.739 s.
2026-01-03 08:37:34.878176 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1217201 on localhost:11437 at 08:37:35.401
2026-01-03 08:37:49.107587 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 14.23 s.
2026-01-03 08:37:49.115177 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 39.151 s.
2026-01-03 08:37:49.131002 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.155499 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.20553 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.229289 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.339863 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:49.363846 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:49.414392 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:37:56.6043 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.633393 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.68298 gannet.stats.ox.ac.uk 1186943 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2026-01-02 r89267), detected cores: 24
2026-01-03 08:37:56.71309 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 08:37:56.833935 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 08:38:07.282704 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:18.375271 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1221451 on localhost:11437 at 08:38:19.028
2026-01-03 08:38:30.977238 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.601 s.
2026-01-03 08:38:30.981696 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1223815 on localhost:11437 at 08:38:31.976
2026-01-03 08:38:44.627997 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 13.646 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 08:38:44.84637 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:38:53.749221 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:04.146436 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1228863 on localhost:11437 at 08:39:04.873
2026-01-03 08:39:17.105902 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.959 s.
2026-01-03 08:39:17.167503 gannet.stats.ox.ac.uk 1186943 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 08:39:28.738544 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1232048 on localhost:11437 at 08:39:29.330
2026-01-03 08:39:40.705118 gannet.stats.ox.ac.uk 1186943 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 11.963 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [145s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 09:45:00.377953 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 09:45:06.579208 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 09:45:12.089938 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 09:45:20.893808 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:26.706987 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:32.390597 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=64548 on localhost:11519 at 09:45:32.636
2026-01-07 09:45:35.313287 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.92 s.
2026-01-07 09:45:35.359963 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:40.810236 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:46.427722 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 09:45:51.995621 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:45:57.396928 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:00.659471 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:04.628317 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:04.638464 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:10.41802 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.431782 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.446358 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.461432 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.476509 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.491818 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.507116 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:10.524061 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:16.122667 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
starting worker pid=35092 on localhost:11519 at 09:46:16.394
starting worker pid=61180 on localhost:11519 at 09:46:16.394
2026-01-07 09:46:23.464277 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:29.535601 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:29.538266 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:29.542183 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=103296 on localhost:11519 at 09:46:29.820
2026-01-07 09:46:32.704279 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.14999999999999 s.} ...
2026-01-07 09:46:32.706837 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=107688 on localhost:11519 at 09:46:32.959
2026-01-07 09:46:35.261713 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.57000000000001 s.
2026-01-07 09:46:35.265539 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=45152 on localhost:11519 at 09:46:35.506
2026-01-07 09:46:38.801665 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.53 s.
2026-01-07 09:46:38.804796 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.26000000000001 s.
2026-01-07 09:46:38.809965 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.813043 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.827097 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.829845 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.86132 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:38.864485 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:38.879274 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:43.509154 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:43.511426 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:43.521788 CRANWIN3 94128 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2026-01-06 r89281 ucrt), detected cores: 96
2026-01-07 09:46:43.524313 CRANWIN3 94128 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:46:43.555696 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 09:46:48.462633 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:46:53.787782 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=14444 on localhost:11519 at 09:46:54.054
2026-01-07 09:46:56.720936 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.92 s.
2026-01-07 09:46:56.723528 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=64252 on localhost:11519 at 09:46:56.969
2026-01-07 09:46:59.742616 CRANWIN3 94128 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.03 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 09:46:59.799379 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:04.318071 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:10.139357 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=70692 on localhost:11519 at 09:47:10.395
2026-01-07 09:47:13.157881 CRANWIN3 94128 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.02000000000001 s.
2026-01-07 09:47:13.19039 CRANWIN3 94128 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:47:18.512842 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=45608 on localhost:11519 at 09:47:18.729
2026-01-07 09:47:21.928186 CRANWIN3 94128 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.42000000000002 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/152s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 05:52:14.359857 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 05:52:20.045834 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 05:52:25.392892 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 05:52:34.357755 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:39.072313 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:43.563875 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3394364 on localhost:11956 at 05:52:43.935
2026-01-07 05:52:47.861479 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.297 s.
2026-01-07 05:52:47.951594 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:52.307539 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:52:57.765159 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 05:53:03.313407 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:08.207243 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:12.353824 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:15.707112 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:15.73402 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:20.245301 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.276569 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.297124 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.33072 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.354787 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.388278 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.429523 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:20.471643 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:24.65668 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
starting worker pid=3404209 on localhost:11956 at 05:53:24.972
starting worker pid=3404208 on localhost:11956 at 05:53:25.098
2026-01-07 05:53:33.402274 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:38.005343 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:38.013165 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:38.020826 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3407430 on localhost:11956 at 05:53:38.423
2026-01-07 05:53:43.297664 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.27500000000001 s.} ...
2026-01-07 05:53:43.300836 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3408703 on localhost:11956 at 05:53:43.714
2026-01-07 05:53:47.290467 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.98899999999999 s.
2026-01-07 05:53:47.292852 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3410376 on localhost:11956 at 05:53:47.670
2026-01-07 05:53:52.94118 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.64800000000001 s.
2026-01-07 05:53:52.943611 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.931 s.
2026-01-07 05:53:52.948986 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:52.963566 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:52.983352 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:52.992322 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:53.058511 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:53.067342 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:53.093966 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:53:56.814679 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:56.827197 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:56.852689 gimli2 3383799 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2026-01-05 r89280), detected cores: 32
2026-01-07 05:53:56.865293 gimli2 3383799 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 05:53:56.929239 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 05:54:02.274351 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:07.719117 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3415269 on localhost:11956 at 05:54:08.123
2026-01-07 05:54:12.190488 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.471 s.
2026-01-07 05:54:12.192771 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3416351 on localhost:11956 at 05:54:12.611
2026-01-07 05:54:16.895272 gimli2 3383799 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.702 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 05:54:16.960993 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:20.649861 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:25.366387 gimli2 3383799 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3419951 on localhost:11956 at 05:54:25.696
2026-01-07 05:54:29.361293 gimli2 3383799 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.995 s.
2026-01-07 05:54:29.415876 gimli2 3383799 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 05:54:34.66923 gimli2 3383799 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3422324 on localhost:11956 at 05:54:35.178
2026-01-07 05:54:41.229543 gimli2 3383799 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.55700000000002 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/160s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-03 05:44:29.082076 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-03 05:44:34.806196 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-03 05:44:39.875712 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-03 05:44:49.355435 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:44:54.18401 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:44:59.041965 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3976251 on localhost:11408 at 05:44:59.513
2026-01-03 05:45:03.667814 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.626 s.
2026-01-03 05:45:03.762693 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:08.497214 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:14.152887 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-03 05:45:20.237874 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:25.662703 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:29.65236 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:33.023897 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:33.060222 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:38.085997 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.105462 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.138207 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.173842 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.21122 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.246883 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.276348 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:38.300142 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:43.258345 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
starting worker pid=3987415 on localhost:11408 at 05:45:43.802
starting worker pid=3987414 on localhost:11408 at 05:45:43.816
2026-01-03 05:45:52.363297 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:45:57.541566 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:45:57.555188 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:45:57.559301 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=3990961 on localhost:11408 at 05:45:57.976
2026-01-03 05:46:02.385395 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.81999999999999 s.} ...
2026-01-03 05:46:02.387968 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3992179 on localhost:11408 at 05:46:02.793
2026-01-03 05:46:07.312619 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.925 s.
2026-01-03 05:46:07.315118 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=3993786 on localhost:11408 at 05:46:07.697
2026-01-03 05:46:12.376384 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.06099999999999 s.
2026-01-03 05:46:12.378369 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.823 s.
2026-01-03 05:46:12.38217 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.394746 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.416452 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.430821 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.501802 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:12.51537 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:12.546135 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:16.437677 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:16.448217 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:16.478409 gimli2 3965710 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2026-01-03 05:46:16.491296 gimli2 3965710 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-03 05:46:16.520907 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-03 05:46:22.84798 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:28.499179 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=3999710 on localhost:11408 at 05:46:28.961
2026-01-03 05:46:34.219338 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.72 s.
2026-01-03 05:46:34.229123 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=4000963 on localhost:11408 at 05:46:34.610
2026-01-03 05:46:39.4661 gimli2 3965710 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.245 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-03 05:46:39.53447 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:43.184434 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:48.122644 gimli2 3965710 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=4003547 on localhost:11408 at 05:46:48.533
2026-01-03 05:46:52.617395 gimli2 3965710 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.495 s.
2026-01-03 05:46:52.67356 gimli2 3965710 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-03 05:46:57.375579 gimli2 3965710 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=4007188 on localhost:11408 at 05:46:57.864
2026-01-03 05:47:03.341136 gimli2 3965710 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.96000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [146s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-07 09:21:17.114046 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-07 09:21:22.963045 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-07 09:21:28.917937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-07 09:21:37.906501 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:43.295393 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:48.5217 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=27524 on localhost:11772 at 09:21:48.807
2026-01-07 09:21:51.492925 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.97000000000001 s.
2026-01-07 09:21:51.572678 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:21:57.483563 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:03.252271 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-07 09:22:09.361009 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:14.96016 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:18.549809 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:23.108796 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:23.122847 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:28.440489 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.452898 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.461225 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.471676 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.480077 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.489696 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.500732 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:28.516936 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:33.534709 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
starting worker pid=82400 on localhost:11772 at 09:22:33.801
starting worker pid=33968 on localhost:11772 at 09:22:33.852
2026-01-07 09:22:40.92937 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:22:46.552524 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:46.555454 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:46.559623 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=99404 on localhost:11772 at 09:22:46.820
2026-01-07 09:22:49.623891 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.05999999999999 s.} ...
2026-01-07 09:22:49.626153 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=105556 on localhost:11772 at 09:22:49.878
2026-01-07 09:22:52.388816 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s.
2026-01-07 09:22:52.391919 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=76496 on localhost:11772 at 09:22:52.702
2026-01-07 09:22:56.076346 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.68000000000001 s.
2026-01-07 09:22:56.079143 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.53 s.
2026-01-07 09:22:56.083799 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.086699 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.099104 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.101404 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.143046 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:22:56.145554 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:22:56.157861 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:00.46251 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:23:00.465065 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:23:00.476378 CRANWIN3 31972 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2026-01-07 09:23:00.479095 CRANWIN3 31972 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-07 09:23:00.517118 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-07 09:23:05.955452 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:11.266958 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=107288 on localhost:11772 at 09:23:11.526
2026-01-07 09:23:14.0467 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.78 s.
2026-01-07 09:23:14.049096 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=27816 on localhost:11772 at 09:23:14.321
2026-01-07 09:23:17.215913 CRANWIN3 31972 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.16 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-07 09:23:17.269341 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:21.954476 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:27.52312 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57564 on localhost:11772 at 09:23:27.794
2026-01-07 09:23:30.289776 CRANWIN3 31972 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.77000000000001 s.
2026-01-07 09:23:30.317935 CRANWIN3 31972 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-07 09:23:35.670567 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=87672 on localhost:11772 at 09:23:35.908
2026-01-07 09:23:39.186142 CRANWIN3 31972 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [206s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 16:57:23.62878 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 16:57:32.82465 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 16:57:41.360011 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 16:57:52.975546 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:01.455334 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:09.93103 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=26956 on localhost:11044 at 16:58:10.276
2026-01-05 16:58:13.740134 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.81 s.
2026-01-05 16:58:13.806471 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:21.393564 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:29.374142 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 16:58:37.271728 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:44.88705 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:49.915431 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:56.499752 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:56.512752 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:04.740577 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.756815 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.773356 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.791154 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.808977 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.826021 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.843517 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.857898 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:13.496917 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=80984 on localhost:11044 at 16:59:13.810
starting worker pid=84680 on localhost:11044 at 16:59:13.889
2026-01-05 16:59:23.145014 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:31.432715 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:31.43565 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:31.440607 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=11840 on localhost:11044 at 16:59:31.767
2026-01-05 16:59:35.084238 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.64000000000001 s.} ...
2026-01-05 16:59:35.08664 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=21596 on localhost:11044 at 16:59:35.437
2026-01-05 16:59:38.869814 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.78 s.
2026-01-05 16:59:38.872782 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=61816 on localhost:11044 at 16:59:39.139
2026-01-05 16:59:43.150226 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.28 s.
2026-01-05 16:59:43.15355 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 11.71 s.
2026-01-05 16:59:43.16102 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.165756 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.184282 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.18671 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.224996 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.229204 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.245437 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:50.067591 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.07189 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.091592 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.096234 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.145882 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 16:59:57.978731 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:05.671469 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=40176 on localhost:11044 at 17:00:05.955
2026-01-05 17:00:09.651378 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.96000000000001 s.
2026-01-05 17:00:09.654629 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=111168 on localhost:11044 at 17:00:10.016
2026-01-05 17:00:14.191393 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.54999999999998 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 17:00:14.24468 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:20.969078 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:28.496578 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=104596 on localhost:11044 at 17:00:28.779
2026-01-05 17:00:32.33652 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.84 s.
2026-01-05 17:00:32.373872 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:40.090548 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=66204 on localhost:11044 at 17:00:40.410
2026-01-05 17:00:44.82498 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.72 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64