Last updated on 2026-04-07 07:51:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 34.82 | 268.51 | 303.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 34.61 | 202.60 | 237.21 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 68.00 | 462.54 | 530.54 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 57.00 | ERROR | |||
| r-devel-macos-arm64 | 1.0.4 | 9.00 | 63.00 | 72.00 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 37.00 | 238.00 | 275.00 | OK | |
| r-patched-linux-x86_64 | 1.0.4 | 35.58 | 256.19 | 291.77 | OK | |
| r-release-linux-x86_64 | 1.0.4 | 31.42 | 253.86 | 285.28 | OK | |
| r-release-macos-arm64 | 1.0.4 | OK | ||||
| r-release-macos-x86_64 | 1.0.4 | 21.00 | 221.00 | 242.00 | OK | |
| r-release-windows-x86_64 | 1.0.4 | 37.00 | 229.00 | 266.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.4 | 22.00 | 211.00 | 233.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.4 | 49.00 | 316.00 | 365.00 | OK |
Version: 1.0.4
Check: whether the package can be loaded with stated dependencies
Result: WARN
Loading required package: biomaRt
Loading required package: methods
Loading required package: caret
Loading required package: ggplot2
Loading required package: lattice
Error: package or namespace load failed for ‘caret’:
.onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Error: package ‘caret’ could not be loaded
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: whether the package can be unloaded cleanly
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: package ‘caret’ could not be loaded
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: whether the namespace can be loaded with stated dependencies
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: whether the namespace can be unloaded cleanly
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: loading without being on the library search path
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Loading required package: biomaRt
Loading required package: caret
Loading required package: ggplot2
Loading required package: lattice
Error: package or namespace load failed for ‘caret’:
.onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Error: package ‘caret’ could not be loaded
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
It looks like this package has a loading problem when not on .libPaths:
see the messages for details.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: dependencies in R code
Result: NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
25: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
24: runHook(".onLoad", env, package.lib, package)
23: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
22: asNamespace(ns)
21: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
20: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19: asNamespace(ns)
18: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
17: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16: asNamespac
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: S3 generic/method consistency
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
25: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
24: runHook(".onLoad", env, package.lib, package)
23: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
22: asNamespace(ns)
21: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
20: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19: asNamespace(ns)
18: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
17: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16: asNamespac
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: replacement functions
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
25: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
24: runHook(".onLoad", env, package.lib, package)
23: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
22: asNamespace(ns)
21: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
20: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19: asNamespace(ns)
18: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
17: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16: asNamespac
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
The argument of a replacement function which corresponds to the right
hand side must be named ‘value’.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: foreign function calls
Result: NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
25: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
24: runHook(".onLoad", env, package.lib, package)
23: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
22: asNamespace(ns)
21: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
20: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19: asNamespace(ns)
18: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
17: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16: asNamespac
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: R code for possible problems
Result: ERROR
Incorrect (un)loading of package shared object.
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
The system-specific extension for shared objects must not be added.
See ?library.dynam.
[64s/226s] NOTE
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
25: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
24: runHook(".onLoad", env, package.lib, package)
23: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
22: asNamespace(ns)
21: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
20: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19: asNamespace(ns)
18: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
17: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16: asNamespac
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Found the following possibly unsafe calls:
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: .onLoad failed in loadNamespace() for 'parallelly', details:
call: basename(pwd)
error: a character vector argument expected
Call sequence:
25: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
24: runHook(".onLoad", env, package.lib, package)
23: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
22: asNamespace(ns)
21: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
20: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
19: asNamespace(ns)
18: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
.libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
17: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]])
16: asNamespac
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.4
Check: for missing documentation entries
Result: WARN
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
Error: package ‘caret’ could not be loaded
Call sequence:
3: stop(gettextf("package %s could not be loaded", sQuote(pkg)),
call. = FALSE, domain = NA)
2: .getRequiredPackages2(pkgInfo, quietly = quietly, lib.loc = c(lib.loc,
.libPaths()))
1: library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE)
Execution halted
shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-fedora-gcc