Last updated on 2025-02-22 11:51:45 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.0 | 22.13 | 737.28 | 759.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.0.0 | 14.51 | 565.08 | 579.59 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.0.0 | 266.49 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 3.0.0 | 262.36 | ERROR | |||
| r-devel-macos-arm64 | 3.0.0 | 170.00 | OK | |||
| r-devel-macos-x86_64 | 3.0.0 | 595.00 | OK | |||
| r-devel-windows-x86_64 | 3.0.0 | 20.00 | 512.00 | 532.00 | OK | |
| r-patched-linux-x86_64 | 3.0.0 | 19.86 | 683.54 | 703.40 | OK | |
| r-release-linux-x86_64 | 3.0.0 | 20.05 | 677.93 | 697.98 | OK | |
| r-release-macos-arm64 | 3.0.0 | 316.00 | OK | |||
| r-release-macos-x86_64 | 3.0.0 | 783.00 | OK | |||
| r-release-windows-x86_64 | 3.0.0 | 20.00 | 539.00 | 559.00 | OK | |
| r-oldrel-macos-arm64 | 2.7.0 | 268.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 3.0.0 | 575.00 | OK | |||
| r-oldrel-windows-x86_64 | 3.0.0 | 28.00 | 718.00 | 746.00 | OK |
Version: 3.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [95s/186s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ]
══ Skipped tests (27) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-computePathways.R:8:3', 'test-computePathways.R:53:3',
'test-multipleCohortTables.R:68:3'
• On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:225:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:216:3'
• On Linux (7): 'test-computePathways.R:720:3',
'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ─────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:78:3'): includeTreatments ────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:122:3'): indexDateOffset ─────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:177:3'): minEraDuration ──────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:192:3'): splitEventCohorts ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:230:3'): splitTime ───────────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:245:3'): eraCollapseSize ─────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:277:3'): combinationWindow ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ──────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:403:3'): filterTreatments ────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:555:3'): FRFS combination ────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:608:3'): LRFS combination ────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:662:3'): No target records ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:682:3'): Empty cohort table ──────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:704:3'): No target defined ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ───────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:7:3'): A ─────────────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:49:3'): A-B ──────────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:93:3'): A-B-C ────────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:137:3'): A-B+C ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:181:3'): A+B-C ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ─────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:314:3'): A-B-A ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ──────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:402:3'): A-B-B ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:446:3'): A+B-A ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:490:3'): A-A-B ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ──────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ─────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ─────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ───────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ───────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ───────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:844:3'): start event == start target ─────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:886:3'): end event == end target ─────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:970:3'): start event < start target ──────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ───────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ──────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ──────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ──────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
[ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 3.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [92s/168s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(TreatmentPatterns)
>
> test_check("TreatmentPatterns")
Starting 2 test processes
[ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ]
══ Skipped tests (27) ══════════════════════════════════════════════════════════
• Eunomia [2.0.0] bug (8): 'test-CDMInterfaceDBC.R:6:3',
'test-CDMInterfaceDBC.R:24:3', 'test-CDMInterfaceDBC.R:53:3',
'test-CDMInterfaceDBC.R:80:3', 'test-CDMInterfaceDBC.R:117:3',
'test-computePathways.R:8:3', 'test-computePathways.R:53:3',
'test-multipleCohortTables.R:68:3'
• On CRAN (12): 'test-CDMInterface.R:7:3', 'test-export.R:314:3',
'test-export.R:381:3', 'test-export.R:428:3', 'test-export.R:470:3',
'test-export.R:514:3', 'test-export.R:589:3', 'test-export.R:657:3',
'test-export.R:685:3', 'test-pathwaysLogical.R:225:3',
'test-pathwaysMultipleTargetsLogical.R:19:3',
'test-pathwaysMultipleTargetsLogical.R:216:3'
• On Linux (7): 'test-computePathways.R:720:3',
'test-executeTreatmentPatterns.R:10:3', 'test-export.R:30:3',
'test-export.R:99:3', 'test-export.R:149:3', 'test-export.R:193:3',
'test-export.R:237:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-CDMInterfaceCDMC.R:8:3'): (code run outside of `test_that()`) ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-CDMInterfaceCDMC.R:8:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:32:3'): computePathways CDMConnector ─────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:32:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:78:3'): includeTreatments ────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:78:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:122:3'): indexDateOffset ─────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:122:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:177:3'): minEraDuration ──────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:177:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:192:3'): splitEventCohorts ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:192:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:230:3'): splitTime ───────────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:230:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:245:3'): eraCollapseSize ─────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:245:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:277:3'): combinationWindow ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:277:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:294:3'): minPostCombinationDuration: 30 ──────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:294:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:403:3'): filterTreatments ────────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-computePathways.R:403:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:555:3'): FRFS combination ────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:555:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:608:3'): LRFS combination ────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-computePathways.R:608:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:662:3'): No target records ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:662:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:682:3'): Empty cohort table ──────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:682:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
── Error ('test-computePathways.R:704:3'): No target defined ───────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-computePathways.R:704:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
── Error ('test-executeTreatmentPatterns.R:28:3'): CDMConnector ────────────────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. └─TreatmentPatterns:::generateCohortTableCDMC() at test-executeTreatmentPatterns.R:28:3
2. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
3. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
4. └─duckdb (local) .local(drv, ...)
5. └─duckdb:::path_normalize(dbdir)
── Error ('test-multipleCohortTables.R:7:3'): multiple cohort_tables ───────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-multipleCohortTables.R:7:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:7:3'): A ─────────────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:7:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:49:3'): A-B ──────────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:49:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:93:3'): A-B-C ────────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:93:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:137:3'): A-B+C ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:137:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:181:3'): A+B-C ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:181:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:269:3'): A-B-A-B ─────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:269:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:314:3'): A-B-A ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:314:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:358:3'): A-B-B, collapse to A-B ──────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:358:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:402:3'): A-B-B ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:402:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:446:3'): A+B-A ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:446:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:490:3'): A-A-B ───────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:490:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:534:3'): A-A-B, collapse to A-B ──────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:534:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:578:3'): A+B-A+B, collapse to A+B ────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:578:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:623:3'): A+B-A+B ─────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:623:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:668:3'): A-A+B-B ─────────────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:668:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:711:3'): A-A-C-A+B+C-C ───────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:711:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:755:3'): A-A+B+C-A+C-C ───────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:755:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:799:3'): A-A+C-C-B+C-C ───────────────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:799:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:844:3'): start event == start target ─────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:844:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:886:3'): end event == end target ─────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:886:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:928:3'): start-end event == start-end target ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:928:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:970:3'): start event < start target ──────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:970:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1012:3'): start event < start target, periodPrior = -60 ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1012:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1054:3'): start event > end target ───────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1054:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1097:3'): collapse A-B-B-B to A-A+B-B ────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1097:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1143:3'): collapse A-B-B-B to A-B ────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1143:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1187:3'): collapse A-A-B-B to A-B ────────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1187:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1231:3'): collapse A-A-B-B to A-B 2 ──────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1231:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysLogical.R:1275:3'): collapse A-A-B-B to A+B 2 ──────────
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysLogical.R:1275:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-pathwaysMultipleTargetsLogical.R:311:3'): Events outside target ──
Error in `eunomia_dir()`: could not find function "eunomia_dir"
Backtrace:
▆
1. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir()) at test-pathwaysMultipleTargetsLogical.R:311:3
2. └─DBI::dbConnect(duckdb::duckdb(), dbdir = eunomia_dir())
3. └─duckdb (local) .local(drv, ...)
4. └─duckdb:::path_normalize(dbdir)
── Error ('test-TreatmentPatternsResults.R:3:3'): Method: new(data.frame) ──────
Error: 'eunomia_dir' is not an exported object from 'namespace:CDMConnector'
Backtrace:
▆
1. ├─base::suppressWarnings(generateCohortTableCDMC()) at test-TreatmentPatternsResults.R:3:3
2. │ └─base::withCallingHandlers(...)
3. └─TreatmentPatterns:::generateCohortTableCDMC()
4. ├─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir()) at tests/testthat/helper-generateCohortTableCDMC.R:5:5
5. └─DBI::dbConnect(duckdb::duckdb(), dbdir = CDMConnector::eunomia_dir())
6. └─duckdb (local) .local(drv, ...)
7. └─duckdb:::path_normalize(dbdir)
[ FAIL 49 | WARN 0 | SKIP 27 | PASS 89 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.7.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘Capr’
Flavor: r-oldrel-macos-arm64