Last updated on 2026-10-08 07:04:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.1 | 235.00 | 159.77 | 394.77 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.0.1 | 217.48 | 133.64 | 351.12 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.0.1 | 155.00 | 115.05 | 270.05 | NOTE | |
| r-devel-linux-x86_64-fedora-gcc | 0.0.1 | 244.00 | 119.18 | 363.18 | NOTE | |
| r-devel-windows-x86_64 | 0.0.1 | 359.00 | 265.00 | 624.00 | OK | |
| r-patched-linux-x86_64 | 0.0.1 | 266.92 | 173.40 | 440.32 | OK | |
| r-release-linux-x86_64 | 0.0.1 | OK | ||||
| r-release-macos-arm64 | 0.0.1 | 49.00 | 17.00 | 66.00 | OK | |
| r-release-macos-x86_64 | 0.0.1 | 157.00 | 159.00 | 316.00 | OK | |
| r-release-windows-x86_64 | 0.0.1 | 334.00 | 194.00 | 528.00 | OK | |
| r-oldrel-macos-arm64 | 0.0.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.0.1 | 147.00 | 146.00 | 293.00 | OK | |
| r-oldrel-windows-x86_64 | 0.0.1 | 454.00 | 258.00 | 712.00 | OK |
Version: 0.0.1
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Fabio Demarqui <fndemarqui@est.ufmg.br>’
The Description field contains
et al. (2019) <arXiv:1910.04475>. Model fitting can be carried out via
Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(YPBP)
Loading required package: survival
Attaching package: 'YPBP'
The following object is masked from 'package:stats':
confint
>
> test_check("YPBP")
SAMPLING FOR MODEL 'ypbp' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000177 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.77 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 500 [ 0%] (Warmup)
Chain 1: Iteration: 50 / 500 [ 10%] (Warmup)
Chain 1: Iteration: 100 / 500 [ 20%] (Warmup)
Chain 1: Iteration: 150 / 500 [ 30%] (Warmup)
Chain 1: Iteration: 200 / 500 [ 40%] (Warmup)
Chain 1: Iteration: 250 / 500 [ 50%] (Warmup)
Chain 1: Iteration: 251 / 500 [ 50%] (Sampling)
Chain 1: Iteration: 300 / 500 [ 60%] (Sampling)
Chain 1: Iteration: 350 / 500 [ 70%] (Sampling)
Chain 1: Iteration: 400 / 500 [ 80%] (Sampling)
Chain 1: Iteration: 450 / 500 [ 90%] (Sampling)
Chain 1: Iteration: 500 / 500 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 1.231 seconds (Warm-up)
Chain 1: 1.549 seconds (Sampling)
Chain 1: 2.78 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'ypbp' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 0.00012 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 1.2 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 500 [ 0%] (Warmup)
Chain 2: Iteration: 50 / 500 [ 10%] (Warmup)
Chain 2: Iteration: 100 / 500 [ 20%] (Warmup)
Chain 2: Iteration: 150 / 500 [ 30%] (Warmup)
Chain 2: Iteration: 200 / 500 [ 40%] (Warmup)
Chain 2: Iteration: 250 / 500 [ 50%] (Warmup)
Chain 2: Iteration: 251 / 500 [ 50%] (Sampling)
Chain 2: Iteration: 300 / 500 [ 60%] (Sampling)
Chain 2: Iteration: 350 / 500 [ 70%] (Sampling)
Chain 2: Iteration: 400 / 500 [ 80%] (Sampling)
Chain 2: Iteration: 450 / 500 [ 90%] (Sampling)
Chain 2: Iteration: 500 / 500 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 1.525 seconds (Warm-up)
Chain 2: 1.18 seconds (Sampling)
Chain 2: 2.705 seconds (Total)
Chain 2:
SAMPLING FOR MODEL 'ypbp' NOW (CHAIN 1).
Chain 1:
Chain 1: Gradient evaluation took 0.000103 seconds
Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 1.03 seconds.
Chain 1: Adjust your expectations accordingly!
Chain 1:
Chain 1:
Chain 1: Iteration: 1 / 500 [ 0%] (Warmup)
Chain 1: Iteration: 50 / 500 [ 10%] (Warmup)
Chain 1: Iteration: 100 / 500 [ 20%] (Warmup)
Chain 1: Iteration: 150 / 500 [ 30%] (Warmup)
Chain 1: Iteration: 200 / 500 [ 40%] (Warmup)
Chain 1: Iteration: 250 / 500 [ 50%] (Warmup)
Chain 1: Iteration: 251 / 500 [ 50%] (Sampling)
Chain 1: Iteration: 300 / 500 [ 60%] (Sampling)
Chain 1: Iteration: 350 / 500 [ 70%] (Sampling)
Chain 1: Iteration: 400 / 500 [ 80%] (Sampling)
Chain 1: Iteration: 450 / 500 [ 90%] (Sampling)
Chain 1: Iteration: 500 / 500 [100%] (Sampling)
Chain 1:
Chain 1: Elapsed Time: 0.979 seconds (Warm-up)
Chain 1: 0.643 seconds (Sampling)
Chain 1: 1.622 seconds (Total)
Chain 1:
SAMPLING FOR MODEL 'ypbp' NOW (CHAIN 2).
Chain 2:
Chain 2: Gradient evaluation took 5.9e-05 seconds
Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 0.59 seconds.
Chain 2: Adjust your expectations accordingly!
Chain 2:
Chain 2:
Chain 2: Iteration: 1 / 500 [ 0%] (Warmup)
Chain 2: Iteration: 50 / 500 [ 10%] (Warmup)
Chain 2: Iteration: 100 / 500 [ 20%] (Warmup)
Chain 2: Iteration: 150 / 500 [ 30%] (Warmup)
Chain 2: Iteration: 200 / 500 [ 40%] (Warmup)
Chain 2: Iteration: 250 / 500 [ 50%] (Warmup)
Chain 2: Iteration: 251 / 500 [ 50%] (Sampling)
Chain 2: Iteration: 300 / 500 [ 60%] (Sampling)
Chain 2: Iteration: 350 / 500 [ 70%] (Sampling)
Chain 2: Iteration: 400 / 500 [ 80%] (Sampling)
Chain 2: Iteration: 450 / 500 [ 90%] (Sampling)
Chain 2: Iteration: 500 / 500 [100%] (Sampling)
Chain 2:
Chain 2: Elapsed Time: 0.733 seconds (Warm-up)
Chain 2: 0.78 seconds (Sampling)
Chain 2: 1.513 seconds (Total)
Chain 2:
Saving _problems/test_mle-8.R
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 0 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1):
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_mle.R:8:1'): (code run outside of `test_that()`) ───────────────
Error in `optimHess(theta, fn, gr, control = list(fnscale = -1))`: non-finite value supplied by optim
Backtrace:
▆
1. └─YPBP::ypbp(Surv(time, status) ~ trt, data = gastric, baseline = "odds") at test_mle.R:8:1
2. └─YPBP:::ypbp.mle(...)
3. ├─rstan::optimizing(...)
4. └─rstan::optimizing(...)
5. └─rstan (local) .local(object, ...)
6. └─stats::optimHess(theta, fn, gr, control = list(fnscale = -1))
[ FAIL 1 | WARN 4 | SKIP 1 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.0.1
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from:
‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc