Last updated on 2026-01-17 11:49:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.0 | 7.00 | 101.68 | 108.68 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.5.0 | 5.25 | 76.09 | 81.34 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.5.0 | 12.00 | 160.25 | 172.25 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.5.0 | 13.00 | 187.64 | 200.64 | OK | |
| r-devel-windows-x86_64 | 0.5.0 | 9.00 | 109.00 | 118.00 | OK | |
| r-patched-linux-x86_64 | 0.5.0 | 6.65 | 92.25 | 98.90 | OK | |
| r-release-linux-x86_64 | 0.5.0 | 6.09 | 92.33 | 98.42 | OK | |
| r-release-macos-arm64 | 0.5.0 | OK | ||||
| r-release-macos-x86_64 | 0.5.0 | 5.00 | 179.00 | 184.00 | OK | |
| r-release-windows-x86_64 | 0.5.0 | 9.00 | 109.00 | 118.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.5.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.5.0 | 5.00 | 155.00 | 160.00 | OK | |
| r-oldrel-windows-x86_64 | 0.5.0 | 11.00 | 140.00 | 151.00 | OK |
Version: 0.5.0
Check: relative paths in package URLs
Result: NOTE
Found the following (possibly) invalid URL:
URL: ../reference/index.html#section-derivations
From: inst/doc/admiralvaccine.html
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.5.0
Check: tests
Result: ERROR
Running 'testthat.R' [6s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(admiralvaccine) # nolint
> testthat::test_check("admiralvaccine")
Joining with `by = join_by(USUBJID, FAOBJ, FATESTCD, FATPTREF, AVAL, FATPT, PARAMCD)`
Joining with `by = join_by(USUBJID, FAOBJ, FATESTCD, FATPTREF, AVAL, FATPT, PARAMCD, ANL01FL)`
Joining with `by = join_by(USUBJID, FAOBJ, FATESTCD, FATPTREF, AVAL, FATPT, PARAMCD)`
Joining with `by = join_by(USUBJID, FAOBJ, FATESTCD, FATPTREF, AVAL, FATPT, PARAMCD)`
Saving _problems/test-derive_vars_merged_vaccine-47.R
Saving _problems/test-derive_vars_params-54.R
Saving _problems/test-derive_vars_params-129.R
Saving _problems/test-derive_vars_params-196.R
Saving _problems/test-derive_vars_vaxdt-53.R
[1] "VAX01DT"
[1] "VAX02DT"
[1] "VAX03DT"
Saving _problems/test-derive_vars_vaxdt-110.R
[ FAIL 6 | WARN 1 | SKIP 0 | PASS 29 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-derive_vars_merged_vaccine.R:41:3'): derive_vars_merged_vaccine Test 1: Merging EXTRT variable from EX to FACE ──
Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join"
Backtrace:
▆
1. └─admiralvaccine::derive_vars_merged_vaccine(...) at test-derive_vars_merged_vaccine.R:41:3
2. └─admiral::derive_vars_merged(...)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─base (local) doTryCatch(return(expr), name, parentenv, handler)
── Error ('test-derive_vars_params.R:50:3'): derive_vars_params Test 1: Check if the variables in the lookup dataset getting merged
properly ──
Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join"
Backtrace:
▆
1. ├─admiralvaccine::derive_vars_params(...) at test-derive_vars_params.R:50:3
2. │ ├─... %>% convert_blanks_to_na()
3. │ └─admiral::derive_vars_merged(...)
4. │ └─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─admiral::convert_blanks_to_na(.)
── Error ('test-derive_vars_params.R:125:3'): derive_vars_params Test 2: Checking whether PARAM getting concatenated with
only the existed variables ──
Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join"
Backtrace:
▆
1. ├─admiralvaccine::derive_vars_params(...) at test-derive_vars_params.R:125:3
2. │ ├─... %>% convert_blanks_to_na()
3. │ └─admiral::derive_vars_merged(...)
4. │ └─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─admiral::convert_blanks_to_na(.)
── Error ('test-derive_vars_params.R:192:3'): derive_vars_params Test 3: Checking whether PARAM, PARCAT1 and PARCAT2 getting
concatenated with only the existed variables ──
Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join"
Backtrace:
▆
1. ├─admiralvaccine::derive_vars_params(...) at test-derive_vars_params.R:192:3
2. │ ├─... %>% convert_blanks_to_na()
3. │ └─admiral::derive_vars_merged(...)
4. │ └─base::tryCatch(...)
5. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
8. └─admiral::convert_blanks_to_na(.)
── Error ('test-derive_vars_vaxdt.R:48:3'): derive_vars_vaxdt Test 1: Getting Vaccination dates from EX and
check if output is merged with ADSL ──
Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join"
Backtrace:
▆
1. └─admiralvaccine::derive_vars_vaxdt(...) at test-derive_vars_vaxdt.R:48:3
2. └─admiral::derive_vars_merged(...)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─base (local) doTryCatch(return(expr), name, parentenv, handler)
── Error ('test-derive_vars_vaxdt.R:105:3'): derive_vars_vaxdt Test 2: Check if Vaccination date variables are getting
created when multiple vaccination given on same visit ──
Error in `left_join(dataset, add_data, by = vars2chr(by_vars), relationship = relationship)`: could not find function "left_join"
Backtrace:
▆
1. └─admiralvaccine::derive_vars_vaxdt(...) at test-derive_vars_vaxdt.R:105:3
2. └─admiral::derive_vars_merged(...)
3. └─base::tryCatch(...)
4. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
5. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
6. └─base (local) doTryCatch(return(expr), name, parentenv, handler)
[ FAIL 6 | WARN 1 | SKIP 0 | PASS 29 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64