CRAN Package Check Results for Maintainer ‘MD. Arshad <arshad10867c at gmail.com>’

Last updated on 2026-03-23 23:52:09 CET.

Package	ERROR	OK
annotaR	2	12
BioMoR		14
resLIK		14

Package annotaR

Current CRAN status: ERROR: 2, OK: 12

Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘annotaR-workflow.Rmd’ using rmarkdown Quitting from annotaR-workflow.Rmd:45-56 [annotation] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `.processResults()`: ! Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98. --- Backtrace: ▆ 1. ├─... %>% add_drug_links() 2. ├─annotaR::add_drug_links(.) 3. │ └─"gene" %in% names(annotaR_object) 4. └─annotaR::add_disease_links(.) 5. └─biomaRt::getBM(...) 6. └─biomaRt:::.processResults(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'annotaR-workflow.Rmd' failed with diagnostics: Query ERROR: caught BioMart::Exception::Database: Could not connect to mysql database ensembl_mart_115: DBI connect('database=ensembl_mart_115;host=127.0.0.1;port=5316','ensro',...) failed: Can't connect to MySQL server on '127.0.0.1' (111) at /nfs/public/ro/ensweb/live/mart/www_115/biomart-perl/lib/BioMart/Configuration/DBLocation.pm line 98. --- failed re-building ‘annotaR-workflow.Rmd’ SUMMARY: processing the following file failed: ‘annotaR-workflow.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64

Package BioMoR

Current CRAN status: OK: 14

Package resLIK

Current CRAN status: OK: 14