Last updated on 2025-12-03 05:50:01 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.2-0 | 17.87 | 199.04 | 216.91 | OK | |
| r-devel-linux-x86_64-debian-gcc | 3.2-0 | 11.75 | 136.09 | 147.84 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.2-0 | 38.00 | 313.97 | 351.97 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 3.2-0 | 76.00 | 291.06 | 367.06 | OK | |
| r-devel-windows-x86_64 | 3.2-0 | 29.00 | 216.00 | 245.00 | OK | |
| r-patched-linux-x86_64 | 3.2-0 | 18.42 | 129.83 | 148.25 | ERROR | |
| r-release-linux-x86_64 | 3.2-0 | 15.39 | 189.16 | 204.55 | OK | |
| r-release-macos-arm64 | 3.2-0 | OK | ||||
| r-release-macos-x86_64 | 3.2-0 | 13.00 | 192.00 | 205.00 | OK | |
| r-release-windows-x86_64 | 3.2-0 | 25.00 | 214.00 | 239.00 | OK | |
| r-oldrel-macos-arm64 | 3.2-0 | OK | ||||
| r-oldrel-macos-x86_64 | 3.2-0 | 11.00 | 193.00 | 204.00 | OK | |
| r-oldrel-windows-x86_64 | 3.2-0 | 26.00 | 200.00 | 226.00 | ERROR |
Version: 3.2-0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘tutorial_1.Rmd’ using rmarkdown
Quitting from tutorial_1.Rmd:70-81 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tmap'
---
Backtrace:
▆
1. └─base::library(tmap)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tutorial_1.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building ‘tutorial_1.Rmd’
--- re-building ‘tutorial_2.Rmd’ using rmarkdown
Quitting from tutorial_2.Rmd:39-50 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'tmap'
---
Backtrace:
▆
1. └─base::library(tmap)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tutorial_2.Rmd' failed with diagnostics:
there is no package called 'tmap'
--- failed re-building ‘tutorial_2.Rmd’
SUMMARY: processing the following files failed:
‘tutorial_1.Rmd’ ‘tutorial_2.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 3.2-0
Check: tests
Result: ERROR
Running 'testthat.R' [57s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(blockCV)
blockCV 3.2.0
>
> test_check("blockCV")
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|======================================================================| 100% train_0 train_1 test_0 test_1
Min. : 92.0 Min. :53.00 Min. :0.000 Min. :0.000
Mean :104.6 Mean :78.84 Mean :0.555 Mean :0.445
Max. :111.0 Max. :89.00 Max. :1.000 Max. :1.000
train_0 train_1 test_0 test_1
Min. : 95.0 Min. :53.00 Min. :0 Min. :1
Mean :106.2 Mean :71.01 Mean :0 Mean :1
Max. :111.0 Max. :88.00 Max. :0 Max. :1
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|======================================================================| 100% train test
Min. :162.0 Min. :1
Mean :183.5 Mean :1
Max. :199.0 Max. :1
[1] "cv_buffer"
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|======================================================================| 100% train test
Min. :162.0 Min. :1
Mean :183.5 Mean :1
Max. :199.0 Max. :1
'x' is not convertible to an sf object!
'x' must be an sf or spatial* object.
train_0 train_1 test_0 test_1
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[1] "cv_cluster"
train test
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'x' is not convertible to an sf object!
'x' must be an sf or spatial* object.
'r' is not convertible to a terra SpatRaster object!
'r' must be a SpatRaster, stars, Raster* object, or path to a raster file on disk.
Saving _problems/test-cv_nndm-29.R
Saving _problems/test-cv_nndm-54.R
Saving _problems/test-cv_nndm-78.R
Saving _problems/test-cv_nndm-108.R
'x' is not convertible to an sf object!
'x' must be an sf or spatial* object.
train test
1 431 69
2 447 53
3 436 64
4 302 198
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| | 0%Saving _problems/test-cv_spatial-33.R
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[1] "cv_spatial"
train test
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[1] "cv_spatial"
train test
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[1] "cv_spatial"
train test
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[1] "cv_spatial"
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| | 0%'user_blocks' is not convertible to an sf object!
'user_blocks' must be an sf or spatial* object.
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| | 0%Saving _problems/test-cv_spatial-240.R
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|======================================================================| 100%Saving _problems/test-cv_spatial_autocor-25.R
Saving _problems/test-cv_spatial_autocor-73.R
This function is deprecated! Please use 'cv_spatial_autocor' instead.
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|======================================================================| 100%Saving _problems/test-v2-functions-27.R
This function is deprecated! Please use 'cv_spatial_autocor' instead.
Saving _problems/test-v2-functions-62.R
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|======================================================================| 100% train_0 train_1 test_0 test_1
Min. :190.0 Min. :131.0 Min. :0.000 Min. :0.000
Mean :220.4 Mean :186.9 Mean :0.514 Mean :0.486
Max. :254.0 Max. :243.0 Max. :1.000 Max. :1.000
This function is deprecated! Please use 'cv_cluster' instead.
Saving _problems/test-v2-functions-194.R
[ FAIL 15 | WARN 1638 | SKIP 1 | PASS 164 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test-data.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-cv_nndm.R:22:5'): test that cv_nndm function works properly with presence-absence data ──
Error in `sf::st_distance(rx, x[x_1s, ])`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. └─blockCV::cv_nndm(...) at test-cv_nndm.R:22:5
2. └─sf::st_distance(rx, x[x_1s, ])
3. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-cv_nndm.R:47:5'): test that cv_nndm function works properly with presence-background data ──
Error in `sf::st_distance(rx, x[x_1s, ])`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. └─blockCV::cv_nndm(...) at test-cv_nndm.R:47:5
2. └─sf::st_distance(rx, x[x_1s, ])
3. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-cv_nndm.R:72:5'): test that cv_nndm function works properly with no species specified ──
Error in `sf::st_distance(rx, x[x_1s, ])`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. └─blockCV::cv_nndm(...) at test-cv_nndm.R:72:5
2. └─sf::st_distance(rx, x[x_1s, ])
3. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-cv_nndm.R:99:5'): test cv_nndm function with no matching species column ──
Error in `sf::st_distance(rx, x[x_1s, ])`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-cv_nndm.R:99:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─blockCV::cv_nndm(...)
8. └─sf::st_distance(rx, x[x_1s, ])
9. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-cv_similarity.R:22:5'): test that cv_similarity function works with cv_spatil and MESS ──
Error in ``[<-.data.frame`(`*tmp*`, , paste("Fold", i, sep = ""), value = NA)`: replacement has 1 row, data has 0
Backtrace:
▆
1. └─blockCV::cv_similarity(cv = scv, x = pa_data, r = aus, method = "MESS") at test-cv_similarity.R:22:5
2. ├─base::`[<-`(`*tmp*`, , paste("Fold", i, sep = ""), value = `<lgl>`)
3. └─base::`[<-.data.frame`(...)
── Error ('test-cv_similarity.R:31:5'): test that cv_similarity function works with cv_spatil and L1 ──
Error in ``[<-.data.frame`(`*tmp*`, , paste("Fold", i, sep = ""), value = NA)`: replacement has 1 row, data has 0
Backtrace:
▆
1. └─blockCV::cv_similarity(cv = scv, x = pa_data, r = aus, method = "L1") at test-cv_similarity.R:31:5
2. ├─base::`[<-`(`*tmp*`, , paste("Fold", i, sep = ""), value = `<lgl>`)
3. └─base::`[<-.data.frame`(...)
── Error ('test-cv_similarity.R:40:5'): test that cv_similarity function works with cv_spatil and L2 ──
Error in ``[<-.data.frame`(`*tmp*`, , paste("Fold", i, sep = ""), value = NA)`: replacement has 1 row, data has 0
Backtrace:
▆
1. └─blockCV::cv_similarity(cv = scv, x = pa_data, r = aus, , method = "L2") at test-cv_similarity.R:40:5
2. ├─base::`[<-`(`*tmp*`, , paste("Fold", i, sep = ""), value = `<lgl>`)
3. └─base::`[<-.data.frame`(...)
── Error ('test-cv_spatial.R:21:5'): test cv_spatial function with random assingment and raster file ──
Error in `st_geos_binop("intersects", x, y, sparse = sparse, prepared = prepared, ...)`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. └─blockCV::cv_spatial(...) at test-cv_spatial.R:21:5
2. ├─blocks[x, ]
3. └─sf:::`[.sf`(blocks, x, )
4. ├─base::lengths(op(x, i, ...))
5. ├─sf (local) op(x, i, ...)
6. └─sf:::st_intersects.sf(x, i, ...)
7. └─sf:::st_geos_binop(...)
8. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-cv_spatial.R:233:5'): test cv_spatial with no speceis column match ──
Error in `st_geos_binop("intersects", x, y, sparse = sparse, prepared = prepared, ...)`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-cv_spatial.R:233:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─blockCV::cv_spatial(...)
8. ├─blocks[x, ]
9. └─sf:::`[.sf`(blocks, x, )
10. ├─base::lengths(op(x, i, ...))
11. ├─sf (local) op(x, i, ...)
12. └─sf:::st_intersects.sf(x, i, ...)
13. └─sf:::st_geos_binop(...)
14. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-cv_spatial_autocor.R:21:5'): test cv_spatial_autocor function works ──
<Rcpp::exception/C++Error/error/condition>
Error: OGRCreateCoordinateTransformation(): transformation not available
Backtrace:
▆
1. └─blockCV::cv_spatial_autocor(r = aus, num_sample = 1000, plot = TRUE) at test-cv_spatial_autocor.R:21:5
2. ├─base::plot(cowplot::plot_grid(p1, p2))
3. └─cowplot::plot_grid(p1, p2)
4. └─cowplot::align_plots(...)
5. └─base::lapply(...)
6. └─cowplot (local) FUN(X[[i]], ...)
7. ├─cowplot::as_gtable(x)
8. └─cowplot:::as_gtable.default(x)
9. ├─cowplot::as_grob(plot)
10. └─cowplot:::as_grob.ggplot(plot)
11. └─ggplot2::ggplotGrob(plot)
12. ├─ggplot2::ggplot_gtable(ggplot_build(x))
13. │ └─ggplot2:::attach_plot_env(data@plot@plot_env)
14. │ └─base::options(ggplot2_plot_env = env)
15. ├─ggplot2::ggplot_build(x)
16. └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
17. └─layout$setup(data, plot@data, plot@plot_env)
18. └─ggplot2 (local) setup(..., self = self)
19. └─self$coord$setup_data(data, self$coord_params)
20. └─ggplot2 (local) setup_data(...)
21. └─base::lapply(...)
22. └─ggplot2 (local) FUN(X[[i]], ...)
23. └─base::lapply(layer_data[idx], sf::st_transform, crs = params$crs)
24. ├─sf (local) FUN(X[[i]], ...)
25. └─sf:::st_transform.sfc(X[[i]], ...)
26. ├─sf::st_sfc(...)
27. ├─base::structure(...)
28. └─sf:::CPL_transform(...)
── Error ('test-cv_spatial_autocor.R:69:5'): test cv_spatial_autocor function works with wgs crs ──
Error: [project] cannot get output boundaries for the target crs
Backtrace:
▆
1. ├─blockCV::cv_spatial_autocor(...) at test-cv_spatial_autocor.R:69:5
2. │ └─blockCV:::.check_r(r)
3. │ └─methods::is(r, "SpatRaster")
4. ├─terra::project(aus, "epsg:4326")
5. └─terra::project(aus, "epsg:4326")
6. └─terra (local) .local(x, ...)
7. └─terra:::messages(x, "project")
8. └─terra:::error(f, x@pntr$getError())
── Error ('test-v2-functions.R:23:5'): test spatialAutoRange function works ────
<Rcpp::exception/C++Error/error/condition>
Error: OGRCreateCoordinateTransformation(): transformation not available
Backtrace:
▆
1. └─blockCV::spatialAutoRange(...) at test-v2-functions.R:23:5
2. └─blockCV::cv_spatial_autocor(...)
3. ├─base::plot(cowplot::plot_grid(p1, p2))
4. └─cowplot::plot_grid(p1, p2)
5. └─cowplot::align_plots(...)
6. └─base::lapply(...)
7. └─cowplot (local) FUN(X[[i]], ...)
8. ├─cowplot::as_gtable(x)
9. └─cowplot:::as_gtable.default(x)
10. ├─cowplot::as_grob(plot)
11. └─cowplot:::as_grob.ggplot(plot)
12. └─ggplot2::ggplotGrob(plot)
13. ├─ggplot2::ggplot_gtable(ggplot_build(x))
14. │ └─ggplot2:::attach_plot_env(data@plot@plot_env)
15. │ └─base::options(ggplot2_plot_env = env)
16. ├─ggplot2::ggplot_build(x)
17. └─ggplot2 (local) `ggplot_build.ggplot2::ggplot`(x)
18. └─layout$setup(data, plot@data, plot@plot_env)
19. └─ggplot2 (local) setup(..., self = self)
20. └─self$coord$setup_data(data, self$coord_params)
21. └─ggplot2 (local) setup_data(...)
22. └─base::lapply(...)
23. └─ggplot2 (local) FUN(X[[i]], ...)
24. └─base::lapply(layer_data[idx], sf::st_transform, crs = params$crs)
25. ├─sf (local) FUN(X[[i]], ...)
26. └─sf:::st_transform.sfc(X[[i]], ...)
27. ├─sf::st_sfc(...)
28. ├─base::structure(...)
29. └─sf:::CPL_transform(...)
── Error ('test-v2-functions.R:57:5'): test spatialAutoRange function with x ───
Error in `data.frame(...)`: arguments imply differing number of rows: 500, 0
Backtrace:
▆
1. └─blockCV::spatialAutoRange(...) at test-v2-functions.R:57:5
2. └─base::cbind(speciesData, df)
3. └─sf (local) cbind(deparse.level, ...)
4. ├─sf::st_sf(data.frame(...), sf_column_name = sf_column_name)
5. └─base::data.frame(...)
── Error ('test-v2-functions.R:96:5'): test spatiaBlock function works ─────────
Error in `st_geos_binop("intersects", x, y, sparse = sparse, prepared = prepared, ...)`: st_crs(x) == st_crs(y) is not TRUE
Backtrace:
▆
1. └─blockCV::spatialBlock(...) at test-v2-functions.R:96:5
2. └─blockCV::cv_spatial(...)
3. ├─blocks[x, ]
4. └─sf:::`[.sf`(blocks, x, )
5. ├─base::lengths(op(x, i, ...))
6. ├─sf (local) op(x, i, ...)
7. └─sf:::st_intersects.sf(x, i, ...)
8. └─sf:::st_geos_binop(...)
9. └─base::stopifnot(st_crs(x) == st_crs(y))
── Error ('test-v2-functions.R:187:5'): test that environmental blocking function works ──
Error in `stats::kmeans(x_vals, centers = k, iter.max = 500, nstart = 25, ...)`: more cluster centers than distinct data points.
Backtrace:
▆
1. └─blockCV::envBlock(...) at test-v2-functions.R:187:5
2. └─blockCV::cv_cluster(...)
3. └─stats::kmeans(...)
[ FAIL 15 | WARN 1638 | SKIP 1 | PASS 164 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64
Version: 3.2-0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'tutorial_1.Rmd' using rmarkdown
Quitting from tutorial_1.Rmd:100-114 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! OGRCreateCoordinateTransformation(): transformation not available
---
Backtrace:
▆
1. └─tools:::.buildOneVignette(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─engine$weave(file, quiet = quiet, encoding = enc)
7. └─knitr:::vweave_rmarkdown(...)
8. └─rmarkdown::render(...)
9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. └─knitr:::process_file(text, output)
11. ├─xfun:::handle_error(...)
12. ├─base::withCallingHandlers(...)
13. └─knitr:::process_group(group)
14. └─knitr:::call_block(x)
15. └─knitr:::block_exec(params)
16. └─knitr:::eng_r(options)
17. ├─knitr:::in_input_dir(...)
18. │ └─knitr:::in_dir(input_dir(), expr)
19. └─knitr (local) evaluate(...)
20. └─evaluate::evaluate(...)
21. ├─base::withRestarts(...)
22. │ └─base (local) withRestartList(expr, restarts)
23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. │ │ └─base (local) doWithOneRestart(return(expr), restart)
25. │ └─base (local) withRestartList(expr, restarts[-nr])
26. │ └─base (local) withOneRestart(expr, restarts[[1L]])
27. │ └─base (local) doWithOneRestart(return(expr), restart)
28. ├─evaluate:::with_handlers(...)
29. │ ├─base::eval(call)
30. │ │ └─base::eval(call)
31. │ └─base::withCallingHandlers(...)
32. └─watcher$print_value(ev$value, ev$visible, envir)
33. ├─base::withVisible(handle_value(handler, value, visible, envir))
34. └─evaluate:::handle_value(handler, value, visible, envir)
35. └─handler$value(value, visible)
36. └─knitr (local) fun(x, options = options)
37. ├─base::withVisible(knit_print(x, ...))
38. ├─knitr::knit_print(x, ...)
39. └─tmap:::knit_print.tmap(x, ...)
40. └─tmap:::print.tmap(x, knit = TRUE, options = options, ...)
41. └─tmap:::step3_trans(x3)
42. └─base::lapply(...)
43. └─tmap (local) FUN(X[[i]], ...)
44. └─base::lapply(...)
45. └─tmap (local) FUN(X[[i]], ...)
46. ├─base::do.call(tmapReproject, c(s, list(crs = crs2, raster.warp = raster.warp)))
47. ├─tmap (local) `<fn>`(...)
48. └─tmap:::tmapReproject.sfc(...)
49. └─tmap:::transform_ortho(shp, crs, tmapID)
50. ├─sf::st_transform(shp, crs = crs)
51. └─sf:::st_transform.sf(shp, crs = crs)
52. ├─sf::st_transform(st_geometry(x), crs, ...)
53. └─sf:::st_transform.sfc(st_geometry(x), crs, ...)
54. ├─sf::st_sfc(...)
55. ├─base::structure(...)
56. └─sf:::CPL_transform(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tutorial_1.Rmd' failed with diagnostics:
OGRCreateCoordinateTransformation(): transformation not available
--- failed re-building 'tutorial_1.Rmd'
--- re-building 'tutorial_2.Rmd' using rmarkdown
Quitting from tutorial_2.Rmd:69-83 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! OGRCreateCoordinateTransformation(): transformation not available
---
Backtrace:
▆
1. └─tools:::.buildOneVignette(...)
2. ├─base::tryCatch(...)
3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
6. └─engine$weave(file, quiet = quiet, encoding = enc)
7. └─knitr:::vweave_rmarkdown(...)
8. └─rmarkdown::render(...)
9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10. └─knitr:::process_file(text, output)
11. ├─xfun:::handle_error(...)
12. ├─base::withCallingHandlers(...)
13. └─knitr:::process_group(group)
14. └─knitr:::call_block(x)
15. └─knitr:::block_exec(params)
16. └─knitr:::eng_r(options)
17. ├─knitr:::in_input_dir(...)
18. │ └─knitr:::in_dir(input_dir(), expr)
19. └─knitr (local) evaluate(...)
20. └─evaluate::evaluate(...)
21. ├─base::withRestarts(...)
22. │ └─base (local) withRestartList(expr, restarts)
23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
24. │ │ └─base (local) doWithOneRestart(return(expr), restart)
25. │ └─base (local) withRestartList(expr, restarts[-nr])
26. │ └─base (local) withOneRestart(expr, restarts[[1L]])
27. │ └─base (local) doWithOneRestart(return(expr), restart)
28. ├─evaluate:::with_handlers(...)
29. │ ├─base::eval(call)
30. │ │ └─base::eval(call)
31. │ └─base::withCallingHandlers(...)
32. └─watcher$print_value(ev$value, ev$visible, envir)
33. ├─base::withVisible(handle_value(handler, value, visible, envir))
34. └─evaluate:::handle_value(handler, value, visible, envir)
35. └─handler$value(value, visible)
36. └─knitr (local) fun(x, options = options)
37. ├─base::withVisible(knit_print(x, ...))
38. ├─knitr::knit_print(x, ...)
39. └─tmap:::knit_print.tmap(x, ...)
40. └─tmap:::print.tmap(x, knit = TRUE, options = options, ...)
41. └─tmap:::step3_trans(x3)
42. └─base::lapply(...)
43. └─tmap (local) FUN(X[[i]], ...)
44. └─base::lapply(...)
45. └─tmap (local) FUN(X[[i]], ...)
46. ├─base::do.call(tmapReproject, c(s, list(crs = crs2, raster.warp = raster.warp)))
47. ├─tmap (local) `<fn>`(...)
48. └─tmap:::tmapReproject.sfc(...)
49. └─tmap:::transform_ortho(shp, crs, tmapID)
50. ├─sf::st_transform(shp, crs = crs)
51. └─sf:::st_transform.sf(shp, crs = crs)
52. ├─sf::st_transform(st_geometry(x), crs, ...)
53. └─sf:::st_transform.sfc(st_geometry(x), crs, ...)
54. ├─sf::st_sfc(...)
55. ├─base::structure(...)
56. └─sf:::CPL_transform(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tutorial_2.Rmd' failed with diagnostics:
OGRCreateCoordinateTransformation(): transformation not available
--- failed re-building 'tutorial_2.Rmd'
SUMMARY: processing the following files failed:
'tutorial_1.Rmd' 'tutorial_2.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64