Last updated on 2026-03-26 05:51:26 CET.
| Package | ERROR | OK |
|---|---|---|
| BIEN | 2 | 12 |
| GNRS | 14 | |
| GVS | 4 | 10 |
| NSR | 4 | 10 |
| TNRS | 14 |
Current CRAN status: ERROR: 2, OK: 12
Version: 1.2.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘BIEN.Rmd’ using rmarkdown
[WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead.
--- finished re-building ‘BIEN.Rmd’
--- re-building ‘BIEN_tutorial.Rmd’ using rmarkdown
Quitting from BIEN_tutorial.Rmd:101-105 [xs-occurrences]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `postgresqlNewConnection()`:
! RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "public_vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: Connection timed out
Is the server running on that host and accepting TCP/IP connections?
---
Backtrace:
▆
1. └─BIEN::BIEN_occurrence_species(species = "Xanthium strumarium")
2. └─BIEN:::.BIEN_sql(query, ...)
3. ├─DBI::dbConnect(...)
4. └─RPostgreSQL::dbConnect(...)
5. └─RPostgreSQL::postgresqlNewConnection(drv, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BIEN_tutorial.Rmd' failed with diagnostics:
RPosgreSQL error: could not connect public_bien@vegbiendev.nceas.ucsb.edu:5432 on dbname "public_vegbien": connection to server at "vegbiendev.nceas.ucsb.edu" (128.111.85.31), port 5432 failed: Connection timed out
Is the server running on that host and accepting TCP/IP connections?
--- failed re-building ‘BIEN_tutorial.Rmd’
SUMMARY: processing the following file failed:
‘BIEN_tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.7
Check: package dependencies
Result: ERROR
Package required but not available: ‘RPostgreSQL’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64
Current CRAN status: OK: 14
Current CRAN status: ERROR: 4, OK: 10
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in ‘GVS-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GVS_metadata
> ### Title: Get GVS metadata
> ### Aliases: GVS_metadata
>
> ### ** Examples
>
> {
+ metadata <- GVS_metadata()
+ }
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
Error in names(output) <- c("citations", "version", "sources") :
'names' attribute [3] must be the same length as the vector [0]
Calls: GVS_metadata
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
GVS_collaborators 0.090 0.001 10.526
GVS_citations 0.036 0.009 10.407
GVS_data_dictionary 0.015 0.000 10.301
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.0.1
Check: examples
Result: ERROR
Running examples in 'GVS-Ex.R' failed
The error most likely occurred in:
> ### Name: GVS_metadata
> ### Title: Get GVS metadata
> ### Aliases: GVS_metadata
>
> ### ** Examples
>
> {
+ metadata <- GVS_metadata()
+ }
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
Error in names(output) <- c("citations", "version", "sources") :
'names' attribute [3] must be the same length as the vector [0]
Calls: GVS_metadata
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: ERROR: 4, OK: 10
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘NSR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: NSR_metadata
> ### Title: Get NSR metadata
> ### Aliases: NSR_metadata
>
> ### ** Examples
>
> {
+ metadata <- NSR_metadata()
+ }
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
Error in names(output) <- c("citations", "version", "sources") :
'names' attribute [3] must be the same length as the vector [0]
Calls: NSR_metadata
Execution halted
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NSR_data_dictionary 0.125 0.001 20.456
NSR_citations 0.030 0.009 10.178
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘NSR.Rmd’ using rmarkdown
Quitting from NSR.Rmd:68-79 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(output) <- c("citations", "version", "sources")`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─NSR::NSR_metadata()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'NSR.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building ‘NSR.Rmd’
SUMMARY: processing the following file failed:
‘NSR.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'NSR-Ex.R' failed
The error most likely occurred in:
> ### Name: NSR_metadata
> ### Title: Get NSR metadata
> ### Aliases: NSR_metadata
>
> ### ** Examples
>
> {
+ metadata <- NSR_metadata()
+ }
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
There appears to be a problem reaching the API.
Error in names(output) <- c("citations", "version", "sources") :
'names' attribute [3] must be the same length as the vector [0]
Calls: NSR_metadata
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'NSR.Rmd' using rmarkdown
Quitting from NSR.Rmd:68-79 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `names(output) <- c("citations", "version", "sources")`:
! 'names' attribute [3] must be the same length as the vector [0]
---
Backtrace:
▆
1. └─NSR::NSR_metadata()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'NSR.Rmd' failed with diagnostics:
'names' attribute [3] must be the same length as the vector [0]
--- failed re-building 'NSR.Rmd'
SUMMARY: processing the following file failed:
'NSR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Current CRAN status: OK: 14