Last updated on 2026-03-31 18:49:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 37.00 | 550.15 | 587.15 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 37.00 | 540.09 | 577.09 | ERROR | |
| r-devel-macos-arm64 | 1.0.0 | 4.00 | 124.00 | 128.00 | OK | |
| r-release-macos-arm64 | 1.0.0 | 4.00 | 77.00 | 81.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 13.00 | 233.00 | 246.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 31.00 | 316.00 | 347.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0 | 13.00 | 197.00 | 210.00 | NOTE |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [5m/13m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(patrick)
> library(climatehealth)
>
> test_check("climatehealth")
This is dlnm 2.4.10. For details: help(dlnm) and vignette('dlnmOverview').
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test_diarrhea-121.R
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test_malaria-142.R
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[ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test_wildfire.R:1943:3', 'test_wildfire.R:2020:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_diarrhea.R:83:3'): diarrhea_do_analysis runs end-to-end on synthetic data ──
Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned
The inla program failed and the maximum number of tries has been reached.
Backtrace:
▆
1. ├─climatehealth:::suppress_plot(...) at test_diarrhea.R:83:3
2. │ └─base::force(expr) at ./helper-utils.R:11:3
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. └─climatehealth::diarrhea_do_analysis(...)
6. └─climatehealth:::run_inla_models(...)
7. └─climatehealth (local) fit(base_formula)
8. ├─INLA::inla.rerun(...)
9. │ └─base::stopifnot(any(inherits(object, "inla")))
10. └─INLA::inla(...)
11. └─INLA:::inla.core.safe(...)
── Error ('test_malaria.R:104:3'): malaria_do_analysis runs end-to-end on synthetic data ──
Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned
The inla program failed and the maximum number of tries has been reached.
Backtrace:
▆
1. ├─climatehealth:::suppress_plot(...) at test_malaria.R:104:3
2. │ └─base::force(expr) at ./helper-utils.R:11:3
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. └─climatehealth::malaria_do_analysis(...)
6. └─climatehealth:::run_inla_models(...)
7. └─climatehealth (local) fit(base_formula)
8. ├─INLA::inla.rerun(...)
9. │ └─base::stopifnot(any(inherits(object, "inla")))
10. └─INLA::inla(...)
11. └─INLA:::inla.core.safe(...)
[ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [294s/418s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(patrick)
> library(climatehealth)
>
> test_check("climatehealth")
This is dlnm 2.4.10. For details: help(dlnm) and vignette('dlnmOverview').
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test_diarrhea-121.R
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Saving _problems/test_malaria-142.R
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[ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test_wildfire.R:1943:3', 'test_wildfire.R:2020:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_diarrhea.R:83:3'): diarrhea_do_analysis runs end-to-end on synthetic data ──
Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned
The inla program failed and the maximum number of tries has been reached.
Backtrace:
▆
1. ├─climatehealth:::suppress_plot(...) at test_diarrhea.R:83:3
2. │ └─base::force(expr) at ./helper-utils.R:11:3
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. └─climatehealth::diarrhea_do_analysis(...)
6. └─climatehealth:::run_inla_models(...)
7. └─climatehealth (local) fit(base_formula)
8. ├─INLA::inla.rerun(...)
9. │ └─base::stopifnot(any(inherits(object, "inla")))
10. └─INLA::inla(...)
11. └─INLA:::inla.core.safe(...)
── Error ('test_malaria.R:104:3'): malaria_do_analysis runs end-to-end on synthetic data ──
Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: 16 simultaneous processes spawned
The inla program failed and the maximum number of tries has been reached.
Backtrace:
▆
1. ├─climatehealth:::suppress_plot(...) at test_malaria.R:104:3
2. │ └─base::force(expr) at ./helper-utils.R:11:3
3. ├─base::suppressWarnings(...)
4. │ └─base::withCallingHandlers(...)
5. └─climatehealth::malaria_do_analysis(...)
6. └─climatehealth:::run_inla_models(...)
7. └─climatehealth (local) fit(base_formula)
8. ├─INLA::inla.rerun(...)
9. │ └─base::stopifnot(any(inherits(object, "inla")))
10. └─INLA::inla(...)
11. └─INLA:::inla.core.safe(...)
[ FAIL 2 | WARN 14 | SKIP 2 | PASS 2315 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘INLA’
Flavor: r-oldrel-macos-x86_64