CRAN Package Check Results for Maintainer Damiano Fantini <damiano.fantini at gmail.com>

CRAN Package Check Results for Maintainer ‘Damiano Fantini <damiano.fantini at gmail.com>’

Last updated on 2026-02-07 05:50:34 CET.

Package	ERROR	NOTE	OK
colorhcplot			13
easyPubMed			13
mutSignatures		2	11
TCGAretriever	3		10

Version: 2.1.1
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Damiano Fantini <damiano.fantini@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(given = "Damiano", family = "Fantini", role = c("aut", "cre"), email = "damiano.fantini@gmail.com"), person(given = "Vania", family = "Vidimar", role = "aut"), person(given = c("Joshua", "J"), family = "Meeks", role = "aut")) as necessary. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package TCGAretriever

Current CRAN status: ERROR: 3, OK: 10

Additional issues

M1mac noLD

Version: 1.10.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown Quitting from getting_started_with_TCGAretriever.Rmd:43-57 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. ├─base::grepl("tcga_pub$", all_studies[, "studyId"]) 2. │ └─base::is.factor(x) 3. ├─all_studies[, "studyId"] 4. └─base::`[.data.frame`(all_studies, , "studyId") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started_with_TCGAretriever.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘getting_started_with_TCGAretriever.Rmd’ SUMMARY: processing the following file failed: ‘getting_started_with_TCGAretriever.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 1.10.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘getting_started_with_TCGAretriever.Rmd’ using rmarkdown Quitting from getting_started_with_TCGAretriever.Rmd:43-57 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.frame`: ! undefined columns selected --- Backtrace: ▆ 1. ├─base::grepl("tcga_pub$", all_studies[, "studyId"]) 2. │ └─base::is.factor(x) 3. ├─all_studies[, "studyId"] 4. └─base::`[.data.frame`(all_studies, , "studyId") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started_with_TCGAretriever.Rmd' failed with diagnostics: undefined columns selected --- failed re-building ‘getting_started_with_TCGAretriever.Rmd’ SUMMARY: processing the following file failed: ‘getting_started_with_TCGAretriever.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang