CRAN Package Check Results for Maintainer ‘Emily Gordon <emily.gordon at wadham.ox.ac.uk>’

Last updated on 2025-12-26 17:49:06 CET.

Package ERROR NOTE OK
MEAanalysis 1 2 10

Package MEAanalysis

Current CRAN status: ERROR: 1, NOTE: 2, OK: 10

Version: 0.1.0
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘kableExtra’ ‘knitr’ ‘reshape2’ ‘tidyverse’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.0
Check: examples
Result: ERROR Running examples in 'MEAanalysis-Ex.R' failed The error most likely occurred in: > ### Name: create_electrode_dataset > ### Title: Create Electrode Data Set > ### Aliases: create_electrode_dataset > > ### ** Examples > > output_electrode_burst <- create_electrode_dataset( + data_path = system.file("extdata", "input_electrode_burst.csv", + package = "MEAanalysis"), + recording_identifier = "burst_recording_1") New names: • `` -> `...7` • `` -> `...8` • `` -> `...9` • `` -> `...10` • `` -> `...11` • `` -> `...12` • `` -> `...13` • `` -> `...14` • `` -> `...15` • `` -> `...16` • `` -> `...17` • `` -> `...18` • `` -> `...19` • `` -> `...20` • `` -> `...21` • `` -> `...22` • `` -> `...23` • `` -> `...24` • `` -> `...25` Error in `[.data.table`(data_1, , `:=`(Recording_identifier, recording_identifier), : attempt access index 4/4 in VECTOR_ELT Calls: create_electrode_dataset -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 0.1.0
Check: tests
Result: ERROR Running 'testthat.R' [5s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(MEAanalysis) > > test_check("MEAanalysis") New names: * `` -> `...7` * `` -> `...8` * `` -> `...9` * `` -> `...10` * `` -> `...11` * `` -> `...12` * `` -> `...13` * `` -> `...14` * `` -> `...15` * `` -> `...16` * `` -> `...17` * `` -> `...18` * `` -> `...19` * `` -> `...20` * `` -> `...21` * `` -> `...22` * `` -> `...23` * `` -> `...24` * `` -> `...25` Saving _problems/test-create_electrode_dataset-4.R New names: * `` -> `...7` * `` -> `...8` * `` -> `...9` * `` -> `...10` * `` -> `...11` * `` -> `...12` * `` -> `...13` * `` -> `...14` * `` -> `...15` * `` -> `...16` * `` -> `...17` * `` -> `...18` * `` -> `...19` * `` -> `...20` * `` -> `...21` * `` -> `...22` * `` -> `...23` * `` -> `...24` * `` -> `...25` Saving _problems/test-create_electrode_dataset-12.R New names: * `` -> `...7` * `` -> `...8` * `` -> `...9` * `` -> `...10` * `` -> `...11` * `` -> `...12` * `` -> `...13` * `` -> `...14` * `` -> `...15` * `` -> `...16` * `` -> `...17` * `` -> `...18` * `` -> `...19` * `` -> `...20` * `` -> `...21` * `` -> `...22` * `` -> `...23` * `` -> `...24` * `` -> `...25` Saving _problems/test-create_electrode_dataset-31.R [ FAIL 3 | WARN 0 | SKIP 0 | PASS 11 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-create_electrode_dataset.R:4:3'): create_electrode_dataset output is a datatable ── Error in ``[.data.table`(data_1, , `:=`(Recording_identifier, recording_identifier), by = Electrode)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─MEAanalysis::create_electrode_dataset(...) at test-create_electrode_dataset.R:4:3 2. ├─data_1[, `:=`(Recording_identifier, recording_identifier), by = Electrode] 3. └─data.table:::`[.data.table`(...) ── Error ('test-create_electrode_dataset.R:12:3'): create_electrode_dataset column classes are correct ── Error in ``[.data.table`(data_1, , `:=`(Recording_identifier, recording_identifier), by = Electrode)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─MEAanalysis::create_electrode_dataset(...) at test-create_electrode_dataset.R:12:3 2. ├─data_1[, `:=`(Recording_identifier, recording_identifier), by = Electrode] 3. └─data.table:::`[.data.table`(...) ── Error ('test-create_electrode_dataset.R:31:3'): create_electrode_dataset output does not contain missing values ── Error in ``[.data.table`(data_1, , `:=`(Recording_identifier, recording_identifier), by = Electrode)`: attempt access index 4/4 in VECTOR_ELT Backtrace: ▆ 1. └─MEAanalysis::create_electrode_dataset(...) at test-create_electrode_dataset.R:31:3 2. ├─data_1[, `:=`(Recording_identifier, recording_identifier), by = Electrode] 3. └─data.table:::`[.data.table`(...) [ FAIL 3 | WARN 0 | SKIP 0 | PASS 11 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'MEA_single_electrode_barchart.Rmd' using rmarkdown Quitting from MEA_single_electrode_barchart.Rmd:46-54 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace: ▆ 1. └─MEAanalysis::create_electrode_dataset(...) 2. ├─data_1[, `:=`(Recording_identifier, recording_identifier), by = Electrode] 3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MEA_single_electrode_barchart.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building 'MEA_single_electrode_barchart.Rmd' --- re-building 'MEA_synchrony_index_heatmap.Rmd' using rmarkdown --- finished re-building 'MEA_synchrony_index_heatmap.Rmd' --- re-building 'MEA_well_barchart.Rmd' using rmarkdown Quitting from MEA_well_barchart.Rmd:46-54 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace: ▆ 1. └─MEAanalysis::create_electrode_dataset(...) 2. ├─data_1[, `:=`(Recording_identifier, recording_identifier), by = Electrode] 3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MEA_well_barchart.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building 'MEA_well_barchart.Rmd' SUMMARY: processing the following files failed: 'MEA_single_electrode_barchart.Rmd' 'MEA_well_barchart.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-devel-windows-x86_64

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