CRAN Package Check Results for Maintainer ‘Teng Fei <feit1 at mskcc.org>’

Last updated on 2025-07-10 06:50:46 CEST.

Package ERROR NOTE OK
FLORAL 5 2 6

Package FLORAL

Current CRAN status: ERROR: 5, NOTE: 2, OK: 6

Additional issues

noLD

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ --- re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ using rmarkdown --- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ --- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown Quitting from Using-FLORAL-with-phyloseq.Rmd:25-41 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `file()`: ! cannot open the connection to 'https://figshare.com/ndownloader/files/33076496' --- Backtrace: ▆ 1. ├─... %>% distinct() 2. ├─dplyr::distinct(.) 3. ├─dplyr::select(., -Pool, -Run, -ShotgunBatchID) 4. ├─dplyr::distinct(.) 5. └─utils::read.csv("https://figshare.com/ndownloader/files/33076496") 6. └─utils::read.table(...) 7. └─base::file(file, "rt") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Using-FLORAL-with-phyloseq.Rmd' failed with diagnostics: cannot open the connection to 'https://figshare.com/ndownloader/files/33076496' --- failed re-building ‘Using-FLORAL-with-phyloseq.Rmd’ SUMMARY: processing the following file failed: ‘Using-FLORAL-with-phyloseq.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ --- re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ using rmarkdown OMP: Warning #96: Cannot form a team with 8 threads, using 2 instead. OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). --- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ --- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown Quitting from Using-FLORAL-with-phyloseq.Rmd:25-41 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `file()`: ! cannot open the connection to 'https://figshare.com/ndownloader/files/33076496' --- Backtrace: ▆ 1. ├─... %>% distinct() 2. ├─dplyr::distinct(.) 3. ├─dplyr::select(., -Pool, -Run, -ShotgunBatchID) 4. ├─dplyr::distinct(.) 5. └─utils::read.csv("https://figshare.com/ndownloader/files/33076496") 6. └─utils::read.table(...) 7. └─base::file(file, "rt") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Using-FLORAL-with-phyloseq.Rmd' failed with diagnostics: cannot open the connection to 'https://figshare.com/ndownloader/files/33076496' --- failed re-building ‘Using-FLORAL-with-phyloseq.Rmd’ SUMMARY: processing the following file failed: ‘Using-FLORAL-with-phyloseq.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.4.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ using rmarkdown 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| 0% 10 20 30 40 50 60 70 80 90 100% [----|----|----|----|----|----|----|----|----|----| **************************************************| --- finished re-building ‘Using-FLORAL-for-Microbiome-Analysis.Rmd’ --- re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ using rmarkdown --- finished re-building ‘Using-FLORAL-for-survival-models-with-longitudinal-microbiome-data.Rmd’ --- re-building ‘Using-FLORAL-with-phyloseq.Rmd’ using rmarkdown Quitting from Using-FLORAL-with-phyloseq.Rmd:25-41 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `file()`: ! cannot open the connection to 'https://figshare.com/ndownloader/files/33076496' --- Backtrace: ▆ 1. ├─... %>% distinct() 2. ├─dplyr::distinct(.) 3. ├─dplyr::select(., -Pool, -Run, -ShotgunBatchID) 4. ├─dplyr::distinct(.) 5. └─utils::read.csv("https://figshare.com/ndownloader/files/33076496") 6. └─utils::read.table(...) 7. └─base::file(file, "rt") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Using-FLORAL-with-phyloseq.Rmd' failed with diagnostics: cannot open the connection to 'https://figshare.com/ndownloader/files/33076496' --- failed re-building ‘Using-FLORAL-with-phyloseq.Rmd’ SUMMARY: processing the following file failed: ‘Using-FLORAL-with-phyloseq.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64

Version: 0.4.0
Check: installed package size
Result: NOTE installed size is 8.3Mb sub-directories of 1Mb or more: doc 1.2Mb libs 6.3Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

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