Last updated on 2026-07-23 07:51:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2-6 | 17.49 | 435.12 | 452.61 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2-6 | 12.64 | 282.72 | 295.36 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2-6 | 29.00 | 689.56 | 718.56 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2-6 | 11.00 | 327.95 | 338.95 | OK | |
| r-devel-windows-x86_64 | 1.2-6 | 19.00 | 499.00 | 518.00 | OK | |
| r-patched-linux-x86_64 | 1.2-6 | 19.96 | 421.11 | 441.07 | OK | |
| r-release-linux-x86_64 | 1.2-6 | 15.50 | 420.04 | 435.54 | OK | |
| r-release-macos-arm64 | 1.2-6 | 4.00 | 129.00 | 133.00 | OK | |
| r-release-macos-x86_64 | 1.2-6 | 12.00 | 627.00 | 639.00 | OK | |
| r-release-windows-x86_64 | 1.2-6 | 22.00 | 495.00 | 517.00 | OK | |
| r-oldrel-macos-arm64 | 1.2-6 | OK | ||||
| r-oldrel-macos-x86_64 | 1.2-6 | 10.00 | 649.00 | 659.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2-6 | 25.00 | 602.00 | 627.00 | OK |
Version: 1.2-6
Check: tests
Result: ERROR
Running ‘t-CIcdfplot.R’ [13s/14s]
Running ‘t-Surv2fitdistcens.R’ [2s/2s]
Running ‘t-bootdist.R’ [5s/6s]
Running ‘t-bootdistcens.R’ [2s/2s]
Running ‘t-cdfcomp.R’ [4s/4s]
Running ‘t-cdfcompcens.R’ [2s/2s]
Running ‘t-denscomp.R’ [4s/5s]
Running ‘t-descdist.R’ [2s/2s]
Running ‘t-detectbound.R’ [1s/2s]
Running ‘t-fitdist-burr.R’ [9s/11s]
Running ‘t-fitdist-customoptim.R’ [2s/2s]
Running ‘t-fitdist-hessianpb.R’ [2s/2s]
Running ‘t-fitdist-test-arguments.R’ [2s/2s]
Running ‘t-fitdist.R’ [2s/3s]
Running ‘t-fitdistcens.R’ [4s/4s]
Running ‘t-gen-max-spacing-estim.R’ [2s/2s]
Running ‘t-gofstat.R’ [2s/2s]
Running ‘t-llplot.R’ [2s/2s]
Running ‘t-lnL-surf.R’ [2s/2s]
Running ‘t-logLik-vcov-coef.R’ [2s/2s]
Running ‘t-mgedist.R’ [3s/3s]
Running ‘t-mledist-asymptotic-vcov.R’ [2s/2s]
Running ‘t-mledist-cens.R’ [2s/3s]
Running ‘t-mledist-nocens.R’ [3s/3s]
Running ‘t-mledist-paramsupport.R’ [3s/3s]
Running ‘t-mmedist-asymptotic-vcov.R’ [2s/3s]
Running ‘t-mmedist.R’ [4s/4s]
Running ‘t-msedist.R’ [2s/3s]
Running ‘t-parallel.R’ [0s/0s]
Running ‘t-plotdist.R’ [2s/2s]
Running ‘t-plotdistcens.R’ [2s/3s]
Running ‘t-ppcomp.R’ [2s/3s]
Running ‘t-ppcompcens.R’ [2s/2s]
Running ‘t-qme-discrete.R’ [6s/6s]
Running ‘t-qmedist.R’ [4s/5s]
Running ‘t-qqcomp.R’ [2s/2s]
Running ‘t-qqcompcens.R’ [2s/3s]
Running ‘t-quantiledist.R’ [2s/2s]
Running ‘t-weird-ppcomp-cens.R’ [2s/3s]
Running ‘t-weird-qqcomp-cens.R’ [2s/2s]
Running the tests in ‘tests/t-cdfcompcens.R’ failed.
Complete output:
> require("fitdistrplus")
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
>
> visualize <- FALSE # TRUE for manual tests with visualization of results
>
> # (1) Plot various distributions fitted to bacterial contamination data
> #
> data(smokedfish)
> Clog10 <- log10(smokedfish)
>
> fitsfn <- fitdistcens(Clog10,"norm")
> fitsfl <- fitdistcens(Clog10,"logis")
>
> dgumbel <- function(x,a,b) 1/b*exp((a-x)/b)*exp(-exp((a-x)/b))
> pgumbel <- function(q,a,b) exp(-exp((a-q)/b))
> qgumbel <- function(p,a,b) a-b*log(-log(p))
> fitsfg <- fitdistcens(Clog10, "gumbel", start=list(a=-3,b=3))
>
> cdfcompcens(list(fitsfn,fitsfl,fitsfg))
> cdfcompcens(list(fitsfn,fitsfl,fitsfg), fitlty=1, fitlwd=3)
>
> # Same plot in y logscale
> cdfcompcens(list(fitsfn, fitsfl, fitsfg), NPMLE.method = "Turnbull",
+ ylogscale = TRUE, ylim=c(.5, .99))
Warning message:
In cdfcompcens(list(fitsfn, fitsfl, fitsfg), NPMLE.method = "Turnbull", :*** buffer overflow detected ***: terminated
Aborted
Running the tests in ‘tests/t-plotdistcens.R’ failed.
Complete output:
> require("fitdistrplus")
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
>
> # (1) Plot of an empirical censored distribution (censored data) as a CDF
> # using the default Turnbull method
> #
> data(smokedfish)
> plotdistcens(smokedfish)
> plotdistcens(data.frame(right=smokedfish$right, left=smokedfish$left))
> d1 <- as.data.frame(log10(smokedfish))
> plotdistcens(d1)
>
> #test on first arg
> try(plotdistcens(list(left=smokedfish$left, right=smokedfish$right)))
Error in plotdistcens(list(left = smokedfish$left, right = smokedfish$right)) :
datacens must be a dataframe with two columns named 'left' and 'right' and more than one line
> try(plotdistcens(cbind(left=smokedfish$left, right=smokedfish$right)))
Error in plotdistcens(cbind(left = smokedfish$left, right = smokedfish$right)) :
datacens must be a dataframe with two columns named 'left' and 'right' and more than one line
> d2 <- data.frame(left=smokedfish$right, right=smokedfish$left)
> try(plotdistcens(d2))
Error in plotdistcens(d2) :
some rows in censdata have left values strictly greater than right values
>
> # (2) Add the CDF of a normal distribution and QQ and PP plots
> #
> plotdistcens(smokedfish,"lnorm", para=list(meanlog=-3.6,sdlog=3.5))
> plotdistcens(d1,"norm", para=list(mean=-1.6,sd=1.5))
>
> # (3) Various plots of the same empirical distribution
> #
> # default Wang plot
> plotdistcens(d1, NPMLE = TRUE, NPMLE.method = "Wang")
> plotdistcens(d1, NPMLE = TRUE, NPMLE.method = "Wang", lwd = 3, main = "Wang ECDF plot")
> # Turnbull plot
> plotdistcens(d1, NPMLE = TRUE, NPMLE.method = "Turnbull", col = "red",
+ main = "Turnbull ECDF plot")
Warning message:
In plotdistcens(d1, NPMLE = TRUE, NPMLE.method = "Turnbull", col = "red", :*** buffer overflow detected ***: terminated
Aborted
Running the tests in ‘tests/t-ppcomp.R’ failed.
Complete output:
> require("fitdistrplus")
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
>
> # ?ppcomp
>
> visualize <- FALSE # TRUE for manual tests with visualization of results
> nsample <- 1000
> nsample <- 10
> set.seed(123) # here just to make random sampling reproducible
>
> # (1) Plot various distributions fitted to serving size data
> #
> data(groundbeef)
> serving <- groundbeef$serving
> fitW <- fitdist(serving, "weibull")
> fitln <- fitdist(serving, "lnorm")
> fitg <- fitdist(serving, "gamma")
>
> # sanity checks
> try(ppcomp("list(fitW, fitln, fitg)"), silent = TRUE)
> try(ppcomp(list(fitW, fitln, fitg, a = 1)), silent = TRUE)
>
> # real call
> res <- ppcomp(list(fitW, fitln, fitg))
> str(res)
List of 2
$ obs : num [1:254] 0.00197 0.00591 0.00984 0.01378 0.01772 ...
$ probabilities: num [1:254, 1:3] 0.00966 0.01309 0.03048 0.0432 0.0432 ...
>
> ppcomp(list(fitW, fitln, fitg), legendtext = c("Weibull", "lognormal", "gamma"),
+ main="ground beef fits", xlab="Theo.",
+ ylab="serving sizes (g)", xlim = c(0, 1/2))
>
> ppcomp(list(fitW, fitln, fitg), legendtext=c("Weibull","lognormal","gamma"),
+ main="ground beef fits", xlab="Theo.",
+ ylab="serving sizes (g)", xlogscale=TRUE, line01=FALSE)
Warning message:
In ppcomp(list(fitW, fitln, fitg), legendtext = c("Weibull", "lognormal", :*** buffer overflow detected ***: terminated
Aborted
Running the tests in ‘tests/t-ppcompcens.R’ failed.
Complete output:
> require("fitdistrplus")
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
>
> visualize <- FALSE # TRUE for manual tests with visualization of results
>
> data(smokedfish)
> fitsf <- fitdistcens(smokedfish,"lnorm")
> plot(fitsf)
> ppcompcens(fitsf)
> ppcompcens(fitsf, fillrect = NA)
> ppcompcens(fitsf, fitcol = "black")
> ppcompcens(fitsf, fitcol = "black", fillrect = NA)
> ppcompcens(fitsf, ylim = c(0.4,1))
Warning message:
In ppcompcens(fitsf, ylim = c(0.4, 1)) :*** buffer overflow detected ***: terminated
Aborted
Running the tests in ‘tests/t-qqcomp.R’ failed.
Complete output:
> require("fitdistrplus")
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
>
> # ?qqcomp
> visualize <- FALSE # TRUE for manual tests with visualization of results
> nsample <- 1000
> nsample <- 10
> set.seed(123) # here just to make random sampling reproducible
>
>
> # (1) Plot various distributions fitted to serving size data
> #
> data(groundbeef)
> serving <- groundbeef$serving
> fitW <- fitdist(serving, "weibull")
> fitln <- fitdist(serving, "lnorm")
> fitg <- fitdist(serving, "gamma")
>
> #sanity checks
> try(qqcomp("list(fitW, fitln, fitg)"), silent = TRUE)
> try(qqcomp(list(fitW, fitln, fitg, a = 1)), silent = TRUE)
>
> #real call
> res <- qqcomp(list(fitW, fitln, fitg))
> str(res)
List of 2
$ obs : num [1:254] 10 11.5 17 20 20 20 20 20 20 20 ...
$ quantiles: num [1:254, 1:3] 4.82 7.98 10.09 11.78 13.22 ...
>
> qqcomp(list(fitW, fitln, fitg), legendtext = c("Weibull", "lognormal", "gamma"),
+ main = "ground beef fits", xlab = "Theo.",
+ ylab = "serving sizes (g)", xlim = c(0, 250))
>
> qqcomp(list(fitW, fitln, fitg), legendtext=c("Weibull","lognormal","gamma"),
+ main="ground beef fits", xlab="Theo.",
+ ylab="serving sizes (g)", xlogscale=TRUE)
Warning message:
In qqcomp(list(fitW, fitln, fitg), legendtext = c("Weibull", "lognormal", :*** buffer overflow detected ***: terminated
Aborted
Running the tests in ‘tests/t-qqcompcens.R’ failed.
Complete output:
> require("fitdistrplus")
Loading required package: fitdistrplus
Loading required package: MASS
Loading required package: survival
> visualize <- FALSE # TRUE for manual tests with visualization of results
>
> data(smokedfish)
> fitsf <- fitdistcens(smokedfish,"lnorm")
> plot(fitsf)
> qqcompcens(fitsf)
> qqcompcens(fitsf, fillrect = NA)
> qqcompcens(fitsf, fitcol = "black")
> qqcompcens(fitsf, fitcol = "black", fillrect = NA)
> qqcompcens(fitsf, ylim = c(0,150))
Warning message:
In qqcompcens(fitsf, ylim = c(0, 150)) :*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-gcc