CRAN Package Check Results for Package gkwreg

Last updated on 2025-05-29 18:50:21 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.7 510.27 1326.82 1837.09 OK
r-devel-linux-x86_64-debian-gcc 1.0.7 448.34 1116.72 1565.06 OK
r-devel-linux-x86_64-fedora-clang 1.0.7 2013.55 WARN
r-devel-linux-x86_64-fedora-gcc 1.0.7 2760.52 NOTE
r-devel-windows-x86_64 1.0.7 550.00 720.00 1270.00 OK
r-patched-linux-x86_64 1.0.7 559.98 1567.22 2127.20 OK
r-release-linux-x86_64 1.0.7 560.00 1607.37 2167.37 OK
r-release-macos-arm64 1.0.7 303.00 OK
r-release-macos-x86_64 1.0.7 687.00 OK
r-release-windows-x86_64 1.0.7 561.00 715.00 1276.00 OK
r-oldrel-macos-arm64 1.0.7 314.00 NOTE
r-oldrel-macos-x86_64 1.0.7 760.00 NOTE
r-oldrel-windows-x86_64 1.0.7 107.00 207.00 314.00 NOTE

Check Details

Version: 1.0.7
Check: whether the package can be loaded with stated dependencies
Result: WARN using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.cpp:17: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.cpp:17: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.o make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.cpp:13: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.cpp:13: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.o make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.cpp:19: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.cpp:19: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.o make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwmletmb -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.cpp:1: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.cpp:1: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.o -fopenmp make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.cpp:12: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.cpp:12: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.o make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.cpp:16: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.cpp:16: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.o make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.cpp:19: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.cpp:19: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ 3 warnings generated. clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.o make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044' make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044' make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044' using C++ compiler: ‘clang version 20.1.5’ make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548' clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_mcreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.o In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.cpp:17: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] 273 | Index count = 0; | ^ In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.cpp:17: In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29: In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35: /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] 78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree | ^ /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] 79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree | ^ make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:209: /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.o] Interrupt Warning message: In value[[3L]](cond) : Failed to pre-compile TMB model 'mcreg': TMB model compilation failed. Error: Compilation failed It looks like this package (or one of its dependent packages) has an unstated dependence on a standard package. All dependencies must be declared in DESCRIPTION. See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.7
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘RcppEigen’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.7
Check: installed package size
Result: NOTE installed size is 10.6Mb sub-directories of 1Mb or more: libs 9.2Mb Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.7
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/gkwbetareg_20250528154601/gkwbetareg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'gkwbetareg': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/bkwreg_20250528154601/bkwreg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'bkwreg': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/ekwreg_20250528154601/ekwreg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'ekwreg': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/gkwmletmb_20250528154601/gkwmletmb.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'gkwmletmb': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/gkwreg_20250528154601/gkwreg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'gkwreg': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/kkwreg_20250528154601/kkwreg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'kkwreg': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/kwreg_20250528154601/kwreg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'kwreg': cannot change working directory Warning in file.create(to[okay]) : cannot create file 'C:/RTMP/mcreg_20250528154601/mcreg.cpp', reason 'No such file or directory' Warning in value[[3L]](cond) : Failed to pre-compile TMB model 'mcreg': cannot change working directory A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. Flavor: r-oldrel-windows-x86_64

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