Last updated on 2025-05-29 18:50:21 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.7 | 510.27 | 1326.82 | 1837.09 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.7 | 448.34 | 1116.72 | 1565.06 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 2013.55 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 2760.52 | NOTE | |||
| r-devel-windows-x86_64 | 1.0.7 | 550.00 | 720.00 | 1270.00 | OK | |
| r-patched-linux-x86_64 | 1.0.7 | 559.98 | 1567.22 | 2127.20 | OK | |
| r-release-linux-x86_64 | 1.0.7 | 560.00 | 1607.37 | 2167.37 | OK | |
| r-release-macos-arm64 | 1.0.7 | 303.00 | OK | |||
| r-release-macos-x86_64 | 1.0.7 | 687.00 | OK | |||
| r-release-windows-x86_64 | 1.0.7 | 561.00 | 715.00 | 1276.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.7 | 314.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.7 | 760.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.7 | 107.00 | 207.00 | 314.00 | NOTE |
Version: 1.0.7
Check: whether the package can be loaded with stated dependencies
Result: WARN
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639/gkwbetareg.o
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwbetareg_compile_20250528020639'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.cpp:13:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924/bkwreg.o
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/bkwreg_compile_20250528020924'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137/ekwreg.o
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/ekwreg_compile_20250528021137'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwmletmb -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fopenmp -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.cpp:1:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518/gkwmletmb.o -fopenmp
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwmletmb_compile_20250528021518'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.cpp:12:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108/gkwreg.o
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/gkwreg_compile_20250528022108'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.cpp:16:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554/kkwreg.o
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kkwreg_compile_20250528022554'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kwreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.cpp:19:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
3 warnings generated.
clang++-20 -std=gnu++17 -shared -L/usr/local/clang/lib64 -L/usr/local/clang20/lib -L/usr/local/clang20/lib/x86_64-unknown-linux-gnu -L/usr/local/lib64 -L/usr/local/clang20/lib/clang/20/lib/x86_64-unknown-linux-gnu -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.so /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044/kwreg.o
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044'
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044'
make[1]: Leaving directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/kwreg_compile_20250528023044'
using C++ compiler: ‘clang version 20.1.5’
make[1]: Entering directory '/tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548'
clang++-20 -std=gnu++17 -I"/data/gannet/ripley/R/R-clang/include" -DNDEBUG -I"/data/gannet/ripley/R/test-clang/TMB/include" -I"/data/gannet/ripley/R/test-clang/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_mcreg -DCPPAD_FRAMEWORK -isystem /usr/local/clang20/include -I/usr/local/clang/include -fpic -O3 -Wall -pedantic -frtti -Wp,-D_FORTIFY_SOURCE=3 -Wno-missing-template-arg-list-after-template-kw -c /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.cpp -o /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.o
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:26:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseCore:61:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
273 | Index count = 0;
| ^
In file included from /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.cpp:17:
In file included from /data/gannet/ripley/R/test-clang/TMB/include/TMB.hpp:96:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/Sparse:29:
In file included from /data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/SparseLU:35:
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
78 | Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
| ^
/data/gannet/ripley/R/test-clang/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
79 | Index nsuper_et = 0; // Number of relaxed snodes in the original etree
| ^
make[1]: *** [/data/gannet/ripley/R/R-clang/etc/Makeconf:209: /tmp/RtmpmKqMjS/working_dir/RtmpGHufkP/mcreg_compile_20250528023548/mcreg.o] Interrupt
Warning message:
In value[[3L]](cond) :
Failed to pre-compile TMB model 'mcreg': TMB model compilation failed. Error: Compilation failed
It looks like this package (or one of its dependent packages) has an
unstated dependence on a standard package. All dependencies must be
declared in DESCRIPTION.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.7
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘RcppEigen’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.0.7
Check: installed package size
Result: NOTE
installed size is 10.6Mb
sub-directories of 1Mb or more:
libs 9.2Mb
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.7
Check: whether the namespace can be loaded with stated dependencies
Result: NOTE
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwbetareg_20250528154601/gkwbetareg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwbetareg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/bkwreg_20250528154601/bkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'bkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/ekwreg_20250528154601/ekwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'ekwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwmletmb_20250528154601/gkwmletmb.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwmletmb': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/gkwreg_20250528154601/gkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'gkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/kkwreg_20250528154601/kkwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'kkwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/kwreg_20250528154601/kwreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'kwreg': cannot change working directory
Warning in file.create(to[okay]) :
cannot create file 'C:/RTMP/mcreg_20250528154601/mcreg.cpp', reason 'No such file or directory'
Warning in value[[3L]](cond) :
Failed to pre-compile TMB model 'mcreg': cannot change working directory
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
Flavor: r-oldrel-windows-x86_64