Last updated on 2026-05-03 06:51:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.5.0 | 17.25 | 396.12 | 413.37 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.5.0 | 12.07 | 261.59 | 273.66 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.5.0 | 34.00 | 622.34 | 656.34 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.5.0 | 35.00 | 673.58 | 708.58 | OK | |
| r-devel-windows-x86_64 | 2.5.0 | 25.00 | 220.00 | 245.00 | ERROR | |
| r-patched-linux-x86_64 | 2.5.0 | 20.86 | 363.88 | 384.74 | OK | |
| r-release-linux-x86_64 | 2.5.0 | 18.70 | 378.95 | 397.65 | OK | |
| r-release-macos-arm64 | 2.5.0 | 4.00 | 77.00 | 81.00 | OK | |
| r-release-macos-x86_64 | 2.5.0 | 12.00 | 390.00 | 402.00 | OK | |
| r-release-windows-x86_64 | 2.5.0 | 23.00 | 356.00 | 379.00 | OK | |
| r-oldrel-macos-arm64 | 2.5.0 | 4.00 | 68.00 | 72.00 | OK | |
| r-oldrel-macos-x86_64 | 2.5.0 | 13.00 | 234.00 | 247.00 | OK | |
| r-oldrel-windows-x86_64 | 2.5.0 | 28.00 | 490.00 | 518.00 | OK |
Version: 2.5.0
Check: examples
Result: ERROR
Running examples in 'gtsummary-Ex.R' failed
The error most likely occurred in:
> ### Name: add_overall
> ### Title: Add overall column
> ### Aliases: add_overall add_overall.tbl_summary add_overall.tbl_continuous
> ### add_overall.tbl_svysummary add_overall.tbl_custom_summary
> ### add_overall.tbl_hierarchical add_overall.tbl_hierarchical_count
>
> ### ** Examples
>
> # Example 1 ----------------------------------
> trial |>
+ tbl_summary(include = c(age, grade), by = trt) |>
+ add_overall()
<div id="ydgabwknrs" style="padding-left:0px;padding-right:0px;padding-top:10px;padding-bottom:10px;overflow-x:auto;overflow-y:auto;width:auto;height:auto;">
<style>#ydgabwknrs table {
font-family: system-ui, 'Segoe UI', Roboto, Helvetica, Arial, sans-serif, 'Apple Color Emoji', 'Segoe UI Emoji', 'Segoe UI Symbol', 'Noto Color Emoji';
-webkit-font-smoothing: antialiased;
-moz-osx-font-smoothing: grayscale;
}
#ydgabwknrs thead, #ydgabwknrs tbody, #ydgabwknrs tfoot, #ydgabwknrs tr, #ydgabwknrs td, #ydgabwknrs th {
border-style: none;
}
#ydgabwknrs p {
margin: 0;
padding: 0;
}
#ydgabwknrs .gt_table {
display: table;
border-collapse: collapse;
line-height: normal;
margin-left: auto;
margin-right: auto;
color: #333333;
font-size: 16px;
font-weight: normal;
font-style: normal;
background-color: #FFFFFF;
width: auto;
border-top-style: solid;
border-top-width: 2px;
border-top-color: #A8A8A8;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #A8A8A8;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
}
#ydgabwknrs .gt_caption {
padding-top: 4px;
padding-bottom: 4px;
}
#ydgabwknrs .gt_title {
color: #333333;
font-size: 125%;
font-weight: initial;
padding-top: 4px;
padding-bottom: 4px;
padding-left: 5px;
padding-right: 5px;
border-bottom-color: #FFFFFF;
border-bottom-width: 0;
}
#ydgabwknrs .gt_subtitle {
color: #333333;
font-size: 85%;
font-weight: initial;
padding-top: 3px;
padding-bottom: 5px;
padding-left: 5px;
padding-right: 5px;
border-top-color: #FFFFFF;
border-top-width: 0;
}
#ydgabwknrs .gt_heading {
background-color: #FFFFFF;
text-align: center;
border-bottom-color: #FFFFFF;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
}
#ydgabwknrs .gt_bottom_border {
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#ydgabwknrs .gt_col_headings {
border-top-style: solid;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
}
#ydgabwknrs .gt_col_heading {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: normal;
text-transform: inherit;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: bottom;
padding-top: 5px;
padding-bottom: 6px;
padding-left: 5px;
padding-right: 5px;
overflow-x: hidden;
}
#ydgabwknrs .gt_column_spanner_outer {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: normal;
text-transform: inherit;
padding-top: 0;
padding-bottom: 0;
padding-left: 4px;
padding-right: 4px;
}
#ydgabwknrs .gt_column_spanner_outer:first-child {
padding-left: 0;
}
#ydgabwknrs .gt_column_spanner_outer:last-child {
padding-right: 0;
}
#ydgabwknrs .gt_column_spanner {
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
vertical-align: bottom;
padding-top: 5px;
padding-bottom: 5px;
overflow-x: hidden;
display: inline-block;
width: 100%;
}
#ydgabwknrs .gt_spanner_row {
border-bottom-style: hidden;
}
#ydgabwknrs .gt_group_heading {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-top-style: solid;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
text-align: left;
}
#ydgabwknrs .gt_empty_group_heading {
padding: 0.5px;
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
border-top-style: solid;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
vertical-align: middle;
}
#ydgabwknrs .gt_from_md > :first-child {
margin-top: 0;
}
#ydgabwknrs .gt_from_md > :last-child {
margin-bottom: 0;
}
#ydgabwknrs .gt_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
margin: 10px;
border-top-style: solid;
border-top-width: 1px;
border-top-color: #D3D3D3;
border-left-style: none;
border-left-width: 1px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 1px;
border-right-color: #D3D3D3;
vertical-align: middle;
overflow-x: hidden;
}
#ydgabwknrs .gt_stub {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: solid;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_stub_row_group {
color: #333333;
background-color: #FFFFFF;
font-size: 100%;
font-weight: initial;
text-transform: inherit;
border-right-style: solid;
border-right-width: 2px;
border-right-color: #D3D3D3;
padding-left: 5px;
padding-right: 5px;
vertical-align: top;
}
#ydgabwknrs .gt_row_group_first td {
border-top-width: 2px;
}
#ydgabwknrs .gt_row_group_first th {
border-top-width: 2px;
}
#ydgabwknrs .gt_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_first_summary_row {
border-top-style: solid;
border-top-color: #D3D3D3;
}
#ydgabwknrs .gt_first_summary_row.thick {
border-top-width: 2px;
}
#ydgabwknrs .gt_last_summary_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#ydgabwknrs .gt_grand_summary_row {
color: #333333;
background-color: #FFFFFF;
text-transform: inherit;
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_first_grand_summary_row {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-top-style: double;
border-top-width: 6px;
border-top-color: #D3D3D3;
}
#ydgabwknrs .gt_last_grand_summary_row_top {
padding-top: 8px;
padding-bottom: 8px;
padding-left: 5px;
padding-right: 5px;
border-bottom-style: double;
border-bottom-width: 6px;
border-bottom-color: #D3D3D3;
}
#ydgabwknrs .gt_striped {
background-color: rgba(128, 128, 128, 0.05);
}
#ydgabwknrs .gt_table_body {
border-top-style: solid;
border-top-width: 2px;
border-top-color: #D3D3D3;
border-bottom-style: solid;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
}
#ydgabwknrs .gt_footnotes {
color: #333333;
background-color: #FFFFFF;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
}
#ydgabwknrs .gt_footnote {
margin: 0px;
font-size: 90%;
padding-top: 4px;
padding-bottom: 4px;
padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_sourcenotes {
color: #333333;
background-color: #FFFFFF;
border-bottom-style: none;
border-bottom-width: 2px;
border-bottom-color: #D3D3D3;
border-left-style: none;
border-left-width: 2px;
border-left-color: #D3D3D3;
border-right-style: none;
border-right-width: 2px;
border-right-color: #D3D3D3;
}
#ydgabwknrs .gt_sourcenote {
font-size: 90%;
padding-top: 4px;
padding-bottom: 4px;
padding-left: 5px;
padding-right: 5px;
}
#ydgabwknrs .gt_left {
text-align: left;
}
#ydgabwknrs .gt_center {
text-align: center;
}
#ydgabwknrs .gt_right {
text-align: right;
font-variant-numeric: tabular-nums;
}
#ydgabwknrs .gt_font_normal {
font-weight: normal;
}
#ydgabwknrs .gt_font_bold {
font-weight: bold;
}
#ydgabwknrs .gt_font_italic {
font-style: italic;
}
#ydgabwknrs .gt_super {
font-size: 65%;
}
#ydgabwknrs .gt_footnote_marks {
font-size: 75%;
vertical-align: 0.4em;
position: initial;
}
#ydgabwknrs .gt_asterisk {
font-size: 100%;
vertical-align: 0;
}
#ydgabwknrs .gt_indent_1 {
text-indent: 5px;
}
#ydgabwknrs .gt_indent_2 {
text-indent: 10px;
}
#ydgabwknrs .gt_indent_3 {
text-indent: 15px;
}
#ydgabwknrs .gt_indent_4 {
text-indent: 20px;
}
#ydgabwknrs .gt_indent_5 {
text-indent: 25px;
}
#ydgabwknrs .katex-display {
display: inline-flex !important;
margin-bottom: 0.75em !important;
}
#ydgabwknrs div.Reactable > div.rt-table > div.rt-thead > div.rt-tr.rt-tr-group-header > div.rt-th-group:after {
height: 0px !important;
}
</style>
<table class="gt_table" data-quarto-disable-processing="false" data-quarto-bootstrap="false">
<thead>
<tr class="gt_col_headings">
<th class="gt_col_heading gt_columns_bottom_border gt_left" rowspan="1" colspan="1" scope="col" id="label"><span class='gt_from_md'><strong>Characteristic</strong></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_0"><span class='gt_from_md'><strong>Overall</strong><br />
N = 200</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_1"><span class='gt_from_md'><strong>Drug A</strong><br />
N = 98</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
<th class="gt_col_heading gt_columns_bottom_border gt_center" rowspan="1" colspan="1" scope="col" id="stat_2"><span class='gt_from_md'><strong>Drug B</strong><br />
N = 102</span><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span></th>
</tr>
</thead>
<tbody class="gt_table_body">
<tr><td headers="label" class="gt_row gt_left">Age</td>
<td headers="stat_0" class="gt_row gt_center">47 (38, 57)</td>
<td headers="stat_1" class="gt_row gt_center">46 (37, 60)</td>
<td headers="stat_2" class="gt_row gt_center">48 (39, 56)</td></tr>
<tr><td headers="label" class="gt_row gt_left"> Unknown</td>
<td headers="stat_0" class="gt_row gt_center">11</td>
<td headers="stat_1" class="gt_row gt_center">7</td>
<td headers="stat_2" class="gt_row gt_center">4</td></tr>
<tr><td headers="label" class="gt_row gt_left">Grade</td>
<td headers="stat_0" class="gt_row gt_center"><br /></td>
<td headers="stat_1" class="gt_row gt_center"><br /></td>
<td headers="stat_2" class="gt_row gt_center"><br /></td></tr>
<tr><td headers="label" class="gt_row gt_left"> I</td>
<td headers="stat_0" class="gt_row gt_center">68 (34%)</td>
<td headers="stat_1" class="gt_row gt_center">35 (36%)</td>
<td headers="stat_2" class="gt_row gt_center">33 (32%)</td></tr>
<tr><td headers="label" class="gt_row gt_left"> II</td>
<td headers="stat_0" class="gt_row gt_center">68 (34%)</td>
<td headers="stat_1" class="gt_row gt_center">32 (33%)</td>
<td headers="stat_2" class="gt_row gt_center">36 (35%)</td></tr>
<tr><td headers="label" class="gt_row gt_left"> III</td>
<td headers="stat_0" class="gt_row gt_center">64 (32%)</td>
<td headers="stat_1" class="gt_row gt_center">31 (32%)</td>
<td headers="stat_2" class="gt_row gt_center">33 (32%)</td></tr>
</tbody>
<tfoot>
<tr class="gt_footnotes">
<td class="gt_footnote" colspan="4"><span class="gt_footnote_marks" style="white-space:nowrap;font-style:italic;font-weight:normal;line-height:0;"><sup>1</sup></span> <span class='gt_from_md'>Median (Q1, Q3); n (%)</span></td>
</tr>
</tfoot>
</table>
</div>
>
> # Example 2 ----------------------------------
> trial |>
+ tbl_summary(
+ include = grade,
+ by = trt,
+ percent = "row",
+ statistic = ~"{p}%",
+ digits = ~1
+ ) |>
+ add_overall(
+ last = TRUE,
+ statistic = ~"{p}% (n={n})",
+ digits = ~ c(1, 0)
+ )
Error in as.data.frame.integer(x[[i]], optional = TRUE) :
row names contain missing values
Calls: add_overall ... data.frame -> as.data.frame -> as.data.frame.integer
Execution halted
Flavor: r-devel-windows-x86_64