Last updated on 2025-08-05 12:49:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.7 | 15.25 | 152.73 | 167.98 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.7 | 10.94 | 101.62 | 112.56 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.7 | 261.67 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.7 | 267.25 | OK | |||
| r-devel-windows-x86_64 | 1.0.7 | 17.00 | 214.00 | 231.00 | OK | |
| r-patched-linux-x86_64 | 1.0.7 | 15.49 | 138.82 | 154.31 | OK | |
| r-release-linux-x86_64 | 1.0.7 | 15.79 | 139.00 | 154.79 | OK | |
| r-release-macos-arm64 | 1.0.7 | 104.00 | OK | |||
| r-release-macos-x86_64 | 1.0.7 | 183.00 | OK | |||
| r-release-windows-x86_64 | 1.0.7 | 20.00 | 753.00 | 773.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.7 | 104.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.7 | 158.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.7 | 25.00 | 253.00 | 278.00 | OK |
Version: 1.0.7
Check: examples
Result: ERROR
Running examples in 'neotoma2-Ex.R' failed
The error most likely occurred in:
> ### Name: cite_data,sites-method
> ### Title: Obtain data citations from multiple records.
> ### Aliases: cite_data,sites-method
>
> ### ** Examples
>
> {
+ ds <- get_datasets(1)
+ cite_data(ds)
+ }
Error in (function (cond) :
error in evaluating the argument 'object' in selecting a method for function 'datasets': Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
Calls: cite_data ... get_datasets.numeric -> parseURL -> get_response -> <Anonymous>
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.7
Check: tests
Result: ERROR
Running 'testthat.R' [491s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(neotoma2)
Attaching package: 'neotoma2'
The following object is masked from 'package:stats':
filter
>
> test_check("neotoma2")
[ FAIL 4 | WARN 0 | SKIP 47 | PASS 10 ]
══ Skipped tests (47) ══════════════════════════════════════════════════════════
• Not ready yet (1): 'test_specimens.R:25:3'
• On CRAN (46): 'test-toJSON.R:2:3', 'test_c.R:10:3',
'test_check_contacts.R:10:3', 'test_chroncontrols.R:4:3',
'test_chroncontrols.R:21:3', 'test_chroncontrols.R:35:3', 'test_clean.R:5:3',
'test_datasets.R:3:3', 'test_datasets.R:19:3', 'test_datasets.R:39:3',
'test_datasets.R:86:3', 'test_datasets.R:109:3', 'test_download.R:3:3',
'test_download.R:30:3', 'test_examples.R:3:3', 'test_filter.R:4:3',
'test_filter.R:27:3', 'test_filter.R:50:3', 'test_filter.R:74:3',
'test_filter.R:111:3', 'test_filter.R:138:3', 'test_filter.R:166:3',
'test_filter.R:192:3', 'test_filter.R:208:3', 'test_filter.R:223:3',
'test_generaltests.R:6:3', 'test_generaltests.R:17:3',
'test_generaltests.R:22:3', 'test_generaltests.R:40:3',
'test_generaltests.R:70:3', 'test_generaltests.R:96:3', 'test_methods.R:3:3',
'test_plotLeaflet.r:6:3', 'test_plotLeaflet.r:18:3', 'test_samples.R:11:3',
'test_setsample.R:8:3', 'test_setsite.r:8:3', 'test_sites.R:9:3',
'test_sites.R:21:3', 'test_sites.R:37:3', 'test_sites.R:49:3',
'test_sites.R:90:3', 'test_specimens.R:3:3', 'test_specimens.R:10:3',
'test_specimens.R:18:3', 'test_toWide.R:10:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get_contacts.R:2:3'): Non integer x returns nothing: ───────────
<http_504/http_500/http_error/error/condition>
Error in `get_response(baseurl, x, query)`: Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
Backtrace:
▆
1. ├─neotoma2::get_contacts(x = "Goring") at test-get_contacts.R:2:3
2. ├─neotoma2:::get_contacts.default(x = "Goring")
3. │ ├─parseURL(baseURL, ...) %>% cleanNULL()
4. │ └─neotoma2:::parseURL(baseURL, ...)
5. │ └─neotoma2 (local) get_response(baseurl, x, query)
6. │ └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and \n check the current status of the\n Neotoma API services at \n http://data.neotomadb.org")
7. └─neotoma2:::cleanNULL(.)
── Error ('test-get_table.R:6:3'): Call a single database table: ───────────────
<http_504/http_500/http_error/error/condition>
Error in `get_response(baseurl, x, query)`: Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
Backtrace:
▆
1. ├─testthat::expect_is(get_table("agetypes"), "data.frame") at test-get_table.R:6:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─neotoma2::get_table("agetypes")
5. └─neotoma2:::parseURL(...)
6. └─neotoma2 (local) get_response(baseurl, x, query)
7. └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and \n check the current status of the\n Neotoma API services at \n http://data.neotomadb.org")
── Error ('test-get_table.R:16:3'): Limit and offsets work for the get_table() call ──
<http_504/http_500/http_error/error/condition>
Error in `get_response(baseurl, x, query)`: Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
Backtrace:
▆
1. ├─testthat::expect_false(...) at test-get_table.R:16:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─rlang::hash(get_table("agetypes", limit = 1))
5. └─neotoma2::get_table("agetypes", limit = 1)
6. └─neotoma2:::parseURL(...)
7. └─neotoma2 (local) get_response(baseurl, x, query)
8. └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and \n check the current status of the\n Neotoma API services at \n http://data.neotomadb.org")
── Error ('test_generaltests.R:114:3'): Testing the publications calls. ────────
<http_504/http_500/http_error/error/condition>
Error in `get_response(baseurl, x, query)`: Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
Backtrace:
▆
1. ├─neotoma2::get_publications(c(1, 2, 3, 4)) at test_generaltests.R:114:3
2. ├─neotoma2:::get_publications.numeric(c(1, 2, 3, 4))
3. │ ├─parseURL(baseURL) %>% cleanNULL()
4. │ └─neotoma2:::parseURL(baseURL)
5. │ └─neotoma2 (local) get_response(baseurl, x, query)
6. │ └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and \n check the current status of the\n Neotoma API services at \n http://data.neotomadb.org")
7. └─neotoma2:::cleanNULL(.)
[ FAIL 4 | WARN 0 | SKIP 47 | PASS 10 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.7
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'neotoma2-package.Rmd' using rmarkdown
Quitting from neotoma2-package.Rmd:101-109 [getSiteBySiteID]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `get_response()`:
! Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
---
Backtrace:
▆
1. ├─neotoma2::get_sites(c(24, 47))
2. └─neotoma2:::get_sites.numeric(c(24, 47))
3. └─neotoma2:::parseURL(base_url, ...)
4. └─neotoma2 (local) get_response(baseurl, x, query)
5. └─httr::stop_for_status(response, task = "Could not connect to the Neotoma API.\n Check that the path is valid, and \n check the current status of the\n Neotoma API services at \n http://data.neotomadb.org")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics:
Gateway Timeout (HTTP 504). Failed to Could not connect to the Neotoma API.
Check that the path is valid, and
check the current status of the
Neotoma API services at
http://data.neotomadb.org.
--- failed re-building 'neotoma2-package.Rmd'
SUMMARY: processing the following file failed:
'neotoma2-package.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-windows-x86_64