Last updated on 2025-07-12 18:49:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.6 | 17.03 | 112.65 | 129.68 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.6 | 10.39 | 79.89 | 90.28 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.6 | 206.33 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.6 | 207.96 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.6 | 21.00 | 252.00 | 273.00 | OK | |
| r-patched-linux-x86_64 | 1.0.6 | 18.86 | 104.98 | 123.84 | ERROR | |
| r-release-linux-x86_64 | 1.0.6 | 16.81 | 130.74 | 147.55 | OK | |
| r-release-macos-arm64 | 1.0.5 | 168.00 | OK | |||
| r-release-macos-x86_64 | 1.0.6 | 247.00 | OK | |||
| r-release-windows-x86_64 | 1.0.6 | 21.00 | 155.00 | 176.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.5 | 116.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.6 | 250.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.6 | 24.00 | 180.00 | 204.00 | ERROR |
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘neotoma2-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cite_data,sites-method
> ### Title: Obtain data citations from multiple records.
> ### Aliases: cite_data,sites-method
>
> ### ** Examples
>
> {
+ ds <- get_datasets(1)
+ cite_data(ds)
+ }
Error in `map()`:
ℹ In index: 1.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `x$agerange[[1]]`:
! subscript out of bounds
Backtrace:
▆
1. ├─neotoma2::get_datasets(1)
2. ├─neotoma2:::get_datasets.numeric(1)
3. │ └─neotoma2:::parse_dataset(result)
4. │ └─purrr::map(...)
5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
6. │ ├─purrr:::with_indexed_errors(...)
7. │ │ └─base::withCallingHandlers(...)
8. │ ├─purrr:::call_with_cleanup(...)
9. │ └─neotoma2 (local) .f(.x[[i]], ...)
10. │ └─purrr::map(x$site$datasets, build_dataset)
11. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
12. │ ├─purrr:::with_indexed_errors(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ ├─purrr:::call_with_cleanup(...)
15. │ └─neotoma2 (local) .f(.x[[i]], ...)
16. │ ├─methods::new(...)
17. │ │ ├─methods::initialize(value, ...)
18. │ │ └─methods::initialize(value, ...)
19. │ ├─neotoma2:::use_na(testNull(x$agerange[[1]]$ageold, NA), "int")
20. │ └─neotoma2:::testNull(x$agerange[[1]]$ageold, NA)
21. └─purrr (local) `<fn>`(`<sbscOOBE>`)
22. └─cli::cli_abort(...)
23. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.0.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘neotoma2-package.Rmd’ using rmarkdown
Quitting from neotoma2-package.Rmd:228-232 [getdatasetsbyid]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `x$agerange[[1]]`:
! subscript out of bounds
--- failed re-building ‘neotoma2-package.Rmd’
SUMMARY: processing the following file failed:
‘neotoma2-package.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64
Version: 1.0.6
Check: examples
Result: ERROR
Running examples in ‘neotoma2-Ex.R’ failed
The error most likely occurred in:
> ### Name: cite_data,sites-method
> ### Title: Obtain data citations from multiple records.
> ### Aliases: cite_data,sites-method
>
> ### ** Examples
>
> {
+ ds <- get_datasets(1)
+ cite_data(ds)
+ }
Error in `map()`:
ℹ In index: 1.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `x$agerange[[1]]`:
! subscript out of bounds
Backtrace:
▆
1. ├─neotoma2::get_datasets(1)
2. ├─neotoma2:::get_datasets.numeric(1)
3. │ └─neotoma2:::parse_dataset(result)
4. │ └─purrr::map(...)
5. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
6. │ ├─purrr:::with_indexed_errors(...)
7. │ │ └─base::withCallingHandlers(...)
8. │ ├─purrr:::call_with_cleanup(...)
9. │ └─neotoma2 (local) .f(.x[[i]], ...)
10. │ └─purrr::map(x$site$datasets, build_dataset)
11. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)
12. │ ├─purrr:::with_indexed_errors(...)
13. │ │ └─base::withCallingHandlers(...)
14. │ ├─purrr:::call_with_cleanup(...)
15. │ └─neotoma2 (local) .f(.x[[i]], ...)
16. │ ├─methods::new(...)
17. │ │ ├─methods::initialize(value, ...)
18. │ │ └─methods::initialize(value, ...)
19. │ ├─neotoma2:::use_na(testNull(x$agerange[[1]]$ageold, NA), "int")
20. │ └─neotoma2:::testNull(x$agerange[[1]]$ageold, NA)
21. └─purrr (local) `<fn>`(`<sbscOOBE>`)
22. └─cli::cli_abort(...)
23. └─rlang::abort(...)
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘neotoma2-package.Rmd’ using rmarkdown
Quitting from neotoma2-package.Rmd:228-232 [getdatasetsbyid]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'neotoma2-package.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error in `map()`:
ℹ In index: 1.
Caused by error in `x$agerange[[1]]`:
! subscript out of bounds
--- failed re-building ‘neotoma2-package.Rmd’
SUMMARY: processing the following file failed:
‘neotoma2-package.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-windows-x86_64, r-oldrel-windows-x86_64