Last updated on 2025-05-21 01:49:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.32.4 | 8.33 | 197.61 | 205.94 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.32.4 | 5.86 | 134.94 | 140.80 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.32.4 | 333.94 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.32.4 | 366.41 | OK | |||
| r-devel-windows-x86_64 | 1.32.4 | 10.00 | 572.00 | 582.00 | FAIL | |
| r-patched-linux-x86_64 | 1.32.4 | 10.67 | 187.68 | 198.35 | NOTE | |
| r-release-linux-x86_64 | 1.32.4 | 7.55 | 195.98 | 203.53 | NOTE | |
| r-release-macos-arm64 | 1.32.4 | 132.00 | ERROR | |||
| r-release-macos-x86_64 | 1.32.4 | 304.00 | OK | |||
| r-release-windows-x86_64 | 1.32.4 | 11.00 | 648.00 | 659.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.32.4 | 137.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.32.4 | 211.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.32.4 | 14.00 | 561.00 | 575.00 | OK |
Version: 1.32.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
copyNIfTIHeader.Rd: dropImageDimension, nifti
datatype.Rd: convert.datatype, convert.bitpix
double_ortho.Rd: orthographic
ensure_array.Rd: nifti
fast_readnii.Rd: readNifti, drop_img_dim
img_list_to_ts.Rd: nifti
img_ts_to_df.Rd: nifti
img_ts_to_list.Rd: nifti
img_ts_to_matrix.Rd: nifti
ortho2.Rd: orthographic
random_nifti.Rd: nifti
readNIfTI2.Rd: readNIfTI, drop_img_dim
remake_img.Rd: nifti
replace_dropped_dimensions.Rd: nifti
rescale_img.Rd: drop_img_dim
tempimg.Rd: drop_img_dim
writeNIfTI2.Rd: writeNIfTI, drop_img_dim
write_nifti.Rd: writeNifti
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 1.32.4
Check: re-building of vignette outputs
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> try1 = zscore_img(img, margin=1)
> stopifnot(all.equal(try1, truth1))
>
> z = zscore_img(img, margin=NULL)
> ztrim = zscore_img(img, margin=NULL,
+ centrality = "trimmed_mean", variability = "trimmed_sd")
>
> z = zscore_img(img, centrality = "median", variability = "iqr")
> z = zscore_img(img, centrality = "median", variability = "iqrdiff")
> z = zscore_img(img, centrality = "median", variability = "maddiff")
>
>
>
>
>
> ### * <FOOTER>
> ###
> cleanEx()
> options(digits = 7L)
> base::cat("Time elapsed: ", proc.time() - base::get("ptime", pos = 'CheckExEnv'),"\n")
Time elapsed: 11.57 0.88 12.66 NA NA
> grDevices::dev.off()
null device
1
> ###
> ### Local variables: ***
> ### mode: outline-minor ***
> ### outline-regexp: "\\(> \\)?### [*]+" ***
> ### End: ***
> quit('no')
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 1.32.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘neurobase.Rmd’ using rmarkdown
--- finished re-building ‘neurobase.Rmd’
--- re-building ‘nifti_basics.Rmd’ using rmarkdown
--- finished re-building ‘nifti_basics.Rmd’
--- re-building ‘simple_io.Rmd’ using rmarkdown
trying URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
Quitting from simple_io.Rmd:30-37 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `download.file()`:
! cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
---
Backtrace:
▆
1. └─utils::download.file(url, destfile = t1_file)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'simple_io.Rmd' failed with diagnostics:
cannot open URL 'https://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz'
--- failed re-building ‘simple_io.Rmd’
SUMMARY: processing the following file failed:
‘simple_io.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64